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docker-compose.yml
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docker-compose.yml
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services:
# Production
webknossos:
build:
context: .
dockerfile: Dockerfile
cache_from:
- scalableminds/webknossos
- scalableminds/webknossos:${DEV_CACHE:-master}
image: scalableminds/webknossos:${DOCKER_TAG:-master}
ports:
- "9000:9000"
links:
- "fossildb-persisted:fossildb"
- "postgres-persisted:postgres"
depends_on:
postgres-persisted:
condition: service_healthy
fossildb-persisted:
condition: service_healthy
redis:
condition: service_healthy
command:
- -Dconfig.file=conf/application.conf
- -Djava.net.preferIPv4Stack=true
- -Dtracingstore.fossildb.address=fossildb
- -Dtracingstore.redis.address=redis
- -Ddatastore.redis.address=redis
- -Dslick.db.url=jdbc:postgresql://postgres/webknossos
- -DwebKnossos.sampleOrganization.enabled=false
# the following lines need to be adapted for non-localhost deployments
# - -Dhttp.uri=http://example.org:9000
# - -Dtracingstore.publicUri=http://example.org:9000
# - -Ddatastore.publicUri=http://example.org:9000
# the following lines disable the integrated datastore:
# - -Dplay.modules.enabled-="com.scalableminds.webknossos.datastore.DataStoreModule"
# - -Dplay.http.router="noDS.Routes"
volumes:
- ./binaryData:/webknossos/binaryData
environment:
POSTGRES_URL: jdbc:postgresql://postgres/webknossos
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
user: ${USER_UID:-1000}:${USER_GID:-1000}
webknossos-datastore:
build: webknossos-datastore
image: scalableminds/webknossos-datastore:${DOCKER_TAG:-master}
ports:
- "9090:9090"
volumes:
- ./binaryData:/webknossos-datastore/binaryData
command:
- -J-Xmx20G
- -J-Xms1G
- -Dconfig.file=conf/standalone-datastore.conf
- -Dhttp.port=9090
- -Dhttp.uri=http://webknossos-datastore:9090
- -Ddatastore.webKnossos.uri=webknossos:9000
- -Ddatastore.redis.address=redis
depends_on:
redis:
condition: service_healthy
webknossos-tracingstore:
build: webknossos-tracingstore
image: scalableminds/webknossos-tracingstore:${DOCKER_TAG:-master}
ports:
- "9050:9050"
command:
- -J-Xmx20G
- -J-Xms1G
- -Dconfig.file=conf/standalone-tracingstore.conf
- -Dhttp.port=9050
- -Dhttp.uri=http://webknossos-datastore:9050
- -Dtracingstore.fossildb.address=fossildb
- -Dtracingstore.redis.address=redis
- -Ddatastore.webknossos.uri=webknossos:9000
links:
- "fossildb-persisted:fossildb"
depends_on:
redis:
condition: service_healthy
fossildb-persisted:
condition: service_healthy
# Development
base:
image: scalableminds/webknossos-dev
build:
context: .
dockerfile: Dockerfile.dev
cache_from:
- scalableminds/webknossos-dev
- scalableminds/webknossos-dev:${DEV_CACHE:-master}
environment:
- USER_NAME=${USER_NAME:-sbt-user}
- USER_UID
- USER_GID
- COVERALLS_REPO_TOKEN
- TZ=${TZ:-Europe/Berlin}
- POSTGRES_URL=jdbc:postgresql://postgres/webknossos
- POSTGRES_USER=webknossos_user
- POSTGRES_PASSWORD=secret_password
- HOME=/root
- CI_TAG=${GITHUB_REF}
- CI_BUILD_NUM=${GITHUB_JOB}
- NODE_OPTIONS=--max_old_space_size=2048
# This will be picked up by ava so that the tests fail if a snapshot doesn't exist during CI, see https://github.com/avajs/ava/issues/1585
- CI
working_dir: /home/${USER_NAME:-sbt-user}/webknossos
volumes:
- ".:/home/${USER_NAME:-sbt-user}/webknossos"
- "${DOCKER_CACHE_PREFIX:-~}/.ivy2:/tmp/.ivy2"
- "${DOCKER_CACHE_PREFIX:-~}/.cache/coursier:/root/.cache/coursier"
- "${DOCKER_CACHE_PREFIX:-~}/.cache/yarn:/root/.cache/yarn"
user: ${USER_UID:-1000}:${USER_GID:-1000}
compile:
extends:
service: base
depends_on:
postgres:
condition: service_healthy
dev:
extends:
service: base
ports:
- "5005:5005"
- "9000:9000"
links:
- "fossildb-dev:fossildb"
- "postgres-dev:postgres"
depends_on:
redis:
condition: service_healthy
postgres-dev:
condition: service_healthy
fossildb-dev:
condition: service_healthy
environment:
POSTGRES_URL: jdbc:postgresql://postgres/webknossos
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
command:
- bash
- -c
- >
sbt
-v -d -jvm-debug 5005
"run
-Djava.net.preferIPv4Stack=true
-Dtracingstore.fossildb.address=fossildb
-Dtracingstore.redis.address=redis"
-Ddatastore.redis.address=redis"
stdin_open: true
# Tests
backend-tests:
extends:
service: base
ports:
- "5005:5005"
- "9000:9000"
command: sbt -v "testOnly backend.*"
backend-lint-format:
extends:
service: base
ports:
- "5005:5005"
- "9000:9000"
command: sbt ";scapegoat; scalafmtCheck; util/scalafmtCheck; webknossosTracingstore/scalafmtCheck; webknossosDatastore/scalafmtCheck"
e2e-tests:
extends:
service: backend-tests
depends_on:
redis:
condition: service_healthy
postgres:
condition: service_healthy
fossildb:
condition: service_healthy
environment:
POSTGRES_URL: jdbc:postgresql://postgres/webknossos_testing
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
command:
- bash
- -c
- >
sbt
-v
"testOnly e2e.* --
-Dtracingstore.fossildb.address=fossildb
-Dtracingstore.redis.address=redis
-Ddatastore.redis.address=redis
-Ddatastore.watchFileSystem.enabled=false"
volumes:
- ./binaryData/Organization_X:/home/${USER_NAME:-sbt-user}/webknossos/binaryData/Organization_X
screenshot-tests:
image: scalableminds/puppeteer:master
environment:
- URL
- WK_AUTH_TOKEN
working_dir: /home/pptruser/webknossos
command: bash -c 'for i in {1..3}; do yarn test-screenshot && break; done'
volumes:
- ".:/home/pptruser/webknossos"
user: ${USER_UID:-1000}:${USER_GID:-1000}
# Postgres
postgres:
image: postgres:10-alpine
environment:
POSTGRES_DB: webknossos
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
healthcheck:
test: ["CMD-SHELL", "pg_isready -d webknossos -U webknossos_user -h 127.0.0.1 -p 5432"]
interval: 2s
timeout: 5s
retries: 30
postgres-persisted:
extends:
service: postgres
ports:
- "5434:5432"
volumes:
- "./pg/db:/var/lib/postgresql/data/"
postgres-dev:
extends:
service: postgres
ports:
- "127.0.0.1:5432:5432"
volumes:
- "./pg/dev-db:/var/lib/postgresql/data/"
psql:
extends: postgres
command: psql -h postgres -U webknossos_user webknossos
links:
- "postgres-persisted:postgres"
depends_on:
postgres-persisted:
condition: service_healthy
environment:
PGPASSWORD: secret_password
volumes:
- ./conf/evolutions/:/evolutions/
drop-db:
extends: postgres
command: psql -h postgres -U webknossos_user postgres -c "DROP DATABASE webknossos"
links:
- "postgres-persisted:postgres"
depends_on:
postgres-dev:
condition: service_healthy
environment:
PGPASSWORD: secret_password
# FossilDB
fossildb:
image: scalableminds/fossildb:master__484
command:
- fossildb
- -c
- skeletons,skeletonUpdates,volumes,volumeData,volumeUpdates,volumeSegmentIndex,editableMappings,editableMappingUpdates,editableMappingsInfo,editableMappingsAgglomerateToGraph,editableMappingsSegmentToAgglomerate
user: ${USER_UID:-fossildb}:${USER_GID:-fossildb}
fossildb-persisted:
extends:
service: fossildb
volumes:
- "./fossildb/data:/fossildb/data"
- "./fossildb/backup:/fossildb/backup"
fossildb-dev:
extends:
service: fossildb
volumes:
- "./fossildb-dev/data:/fossildb/data"
- "./fossildb-dev/backup:/fossildb/backup"
# Redis
redis:
image: redis:5.0
command:
- redis-server
healthcheck:
test:
- CMD
- bash
- -c
- "exec 3<> /dev/tcp/127.0.0.1/6379 && echo PING >&3 && head -1 <&3 | grep PONG"
timeout: 1s
interval: 5s
retries: 10