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Commits on Jun 27, 2017

• Add "bwa mem -o FILE" synonym and documentation

  Show description for bc58bf2
  jmarshall

  committed
  bc58bf2

• Added option to write output to file

  

  José Manuel Abuín Mosquera

  authored and

  jmarshall

  committed
  d28da05

Commits on Jun 26, 2017

• Prevent Clang warnings on abs() and fabs() calls

  Show description for ab3a92b
  jmarshall

  committed
  ab3a92b

Commits on Jun 8, 2017

• Merge branch 'dev'

  lh3

  committed
  05c5013

• r1144: output debugging message to stderr

  lh3

  committed
  298284d

Commits on May 18, 2017

• Fix output file parameter for samtools sort

  Show description for 7a77cc4
  ramyala

  committed
  7a77cc4

Commits on May 12, 2017

• Fixed BWTIncFree() memory leaks

  Show description for 6a5caf7
  

  GwenIves

  authored and

  jmarshall

  committed
  6a5caf7

Commits on May 10, 2017

• Only realloc(pac,...) if it needs to be made larger

  Show description for 1972a97
  jmarshall

  committed
  1972a97

Commits on Apr 27, 2017

• updates grch38 URL

  Show description for 6442d00
  bwlang

  authored
  6442d00

Commits on Apr 25, 2017

• Add missing <stdint.h> include

  Show description for beff2e2
  jmarshall

  committed
  beff2e2

• Replace u_int32_t by the more common uint32_t

  Show description for af87825
  jmarshall

  committed
  af87825

Commits on Nov 9, 2016

• Add -M option to bwakit

  jpfeil

  committed
  9dfb970

Commits on Aug 9, 2016

• Forbid literal TAB control characters in @rg line

  jblachly

  committed
  8cc02ba

Commits on Jun 10, 2016

• Update README.md

  Show description for 00e59dd
  rmzelle

  authored
  00e59dd

Commits on May 31, 2016

• Merge branch 'dev'

  lh3

  committed
  5961611

• r1142: added option -5 for Hi-C data

  lh3

  committed
  f123871

• Merge branch 'dev'

  lh3

  committed
  0876421

• Release bwa-0.7.15-r1140

  lh3

  committed
  850dd81

Commits on May 20, 2016

• Merge branch 'dev'

  lh3

  committed
  bdfb9ef

• r1138: fixed typo in insert size estimate (lh3#65)

  Show description for 58bcc25
  lh3

  committed
  58bcc25

Commits on May 4, 2016

• Merge branch 'dev'

  lh3

  committed
  ee730f3

• Release 0.7.14-r1136

  lh3

  committed
  5db0c36

Commits on May 3, 2016

• Merge branch 'dev'

  lh3

  committed
  fe545f6

• r1134: use AH:* instead of AH:Y

  lh3

  committed
  7ec3261

Commits on Apr 28, 2016

• Merge branch 'master' of github.com:lh3/bwa

  lh3

  committed
  6b9be61

• Merge branch 'dev'

  lh3

  committed
  d668311

• r1130: changed "ah" to "AH"

  lh3

  committed
  3c03825

Commits on Mar 31, 2016

• Include in man page info on read types

  Show description for d6636da
  jdagilliland

  committed
  d6636da

• Fix a few typos in man page

  jdagilliland

  committed
  e10fc57

Commits on Mar 17, 2016

• Merge pull request lh3#55 from jdagilliland/master

  Show description for bb7533e
  lh3

  committed
  bb7533e

• Minor doc fix

  Show description for 6460ef5
  jdagilliland

  committed
  6460ef5

Commits on Mar 16, 2016

• option to skip ALT

  lh3

  committed
  2c078eb

Commits on Feb 23, 2016

• Merge branch 'dev'

  lh3

  committed
  8366203

• Released bwa-0.7.13 (r1126)

  lh3

  committed
  9e5852c

• Merge branch 'dev'

  lh3

  committed
  67aa1ca

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