sq.pl.spatial_segment: wrong cells selected by groups parameter

[colganwi]

Description

When the groupsparameter is specified in sq.pl.spatial_segment the cells that are plotted are not the cells where adata.obs[color].isin(groups). For example with the mibitof dataset below, when groups = ["Epithelial","Tcell_CD4"] mostly cells on the left side of the image are plotted and these are not the location of these cell types when groups = None.

...

Minimal reproducible example

import squidpy as sq
import anndata as ad

adata = sq.datasets.mibitof()
sq.pl.spatial_segment(adata,seg_cell_id = "cell_id",library_key  = "library_id",
                      color = "Cluster",library_id = "point23")

sq.pl.spatial_segment(adata,seg_cell_id = "cell_id",library_key  = "library_id",
                      color = "Cluster",library_id = "point23",
                      groups = ["Epithelial","Tcell_CD4"])

Traceback

No errors raised

Version

1.3.1

...

[colganwi]

Name Version Build Channel

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