GitHub - seankhl/bwa at 5c43a1fdc9dbdf141200c1b2353d5c3502426433

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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 417 Commits
.gitignore		.gitignore
COPYING		COPYING
ChangeLog		ChangeLog
Makefile		Makefile
NEWS		NEWS
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README		README
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa.1		bwa.1
bwa.c		bwa.c
bwa.h		bwa.h
bwamem.c		bwamem.c
bwamem.h		bwamem.h
bwamem_pair.c		bwamem_pair.c
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_gen.c		bwt_gen.c
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
bwtsw2_pair.c		bwtsw2_pair.c
example.c		example.c
fastmap.c		fastmap.c
is.c		is.c
kbtree.h		kbtree.h
khash.h		khash.h
kopen.c		kopen.c
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
ksw.c		ksw.c
ksw.h		ksw.h
kvec.h		kvec.h
main.c		main.c
malloc_wrap.c		malloc_wrap.c
malloc_wrap.h		malloc_wrap.h
pemerge.c		pemerge.c
qualfa2fq.pl		qualfa2fq.pl
utils.c		utils.c
utils.h		utils.h
xa2multi.pl		xa2multi.pl

Repository files navigation

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  [email protected]

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.ncbi.nlm.nih.gov/pubmed/20080505
  http://www.ncbi.nlm.nih.gov/pubmed/19451168

Incomplete list of citations (via HubMed.org):

  http://www.hubmed.org/references.cgi?uids=20080505
  http://www.hubmed.org/references.cgi?uids=19451168

Related projects:

  http://pbwa.sourceforge.net/
  http://www.many-core.group.cam.ac.uk/projects/lam.shtml
  http://biodoop-seal.sourceforge.net/
  http://gitorious.org/bwa-cuda