Linux kernel source tree

C in four functions

Toolkit for processing sequences in FASTA/Q formats

Message-passing kernel + userspace

Official home of genome aligner based upon notion of Cactus graphs

Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 1…

Reads simulator

Windowed Adaptive Trimming for fastq files using quality

Flexible genotype query among 30,000+ samples whole-genome

A 3'-end adapter contaminant trimmer

Kernel module to track latencies between 2 events (punch in, punch out) with timeout

This is *NOT* the official repository of samtools.

FM-index representation of a de Bruijn graph

biosal is a distributed BIOlogical Sequence Actor Library.

An extension of Velvet assembler to de novo metagenome assembly from short sequence reads

biosal is a distributed BIOlogical Sequence Actor Library. THIS IS A MIRROR.

Apt Parsing Tools

"Practice algorithms" I managed to avoid in my college career, with tests.

Perl kmer client code

Short read de novo assembler using de Bruijn graphs