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Commits on Jul 23, 2024

• First commit

  simonhmartin

  committed
  1467640

• Fixed bug in nearlyFixedDiffs for filterGeno

  simonhmartin

  committed
  8016e2b

• fixed minor typo

  simonhmartin

  committed
  7a6917c

Commits on Jan 16, 2024

• Added option --noHeader and fixed syntaxWarning issue

  simonhmartin

  committed
  c0b80d9

Commits on Sep 29, 2023

• Merge branch 'master' of https://github.com/simonhmartin/genomics_general

  Show description for 84c2fe3
  simonhmartin

  committed
  84c2fe3

• Merge pull request #102 from swift-213/Scaffold_warning

  Show description for b4c8800
  simonhmartin

  authored
  b4c8800

• altering scaffoldLookup code

  swift-213

  committed
  794e4a2

• updating scaffoldlookup code to include warning

  swift-213

  committed
  3dc5355

Commits on Jun 10, 2023

• fixed minor bug in site test caused by update to python dict behaviour

  simonhmartin

  committed
  8d8f166

Commits on May 3, 2023

• Added options for specifying no population or all individuals as populations

  simonhmartin

  committed
  b892600

• Added options for specifying no population or all individuals as populations

  simonhmartin

  committed
  8066f26

• Added options for specifying no population or all individuals as populations

  simonhmartin

  committed
  da05f8e

Commits on May 2, 2023

• Fixed rare bug in bases output

  simonhmartin

  committed
  9cd2a7d

• Fixed rare bug in bases output

  simonhmartin

  committed
  36285b2

Commits on Mar 31, 2023

• Now allows different scaf names in ref and annotation

  simonhmartin

  committed
  93043cb

Commits on Mar 30, 2023

• Added some more documentation

  simonhmartin

  committed
  a6fd844

• Added some more documentation

  simonhmartin

  committed
  12f7113

• Added some more documentation

  simonhmartin

  committed
  010900d

• Added some more documentation

  simonhmartin

  committed
  9db1806

• Added some more documentation

  simonhmartin

  committed
  4127b5d

Commits on Mar 16, 2023

• Added haplotype statsitics (EXPERIMENTAL)

  simonhmartin

  committed
  9e56f2e

• Fixed bug when using verbose output

  simonhmartin

  committed
  98625f4

Commits on Jul 15, 2022

• Added easier options to specify ploidy

  simonhmartin

  committed
  ca77a3c

Commits on Jul 14, 2022

• Fixed some issues with global variables

  simonhmartin

  committed
  82e686d

Commits on Jun 20, 2022

• Fixed issue with VCF header encoding

  simonhmartin

  committed
  45cade6

• Fixed bug parsing blank lines in header

  simonhmartin

  committed
  992f95a

• Fixed some sloppy coding with global use of non global variables

  simonhmartin

  committed
  7a45385

• Clarified help text

  simonhmartin

  committed
  607bb3d

• Clarified --analysis help text

  simonhmartin

  committed
  b786b22

• Fixed some sloppy coding with global use of non global variables

  simonhmartin

  committed
  cec7caf

• Fixed bug when no outgroup is specified

  simonhmartin

  committed
  1d9880d

Commits on May 26, 2022

• Fixed recursive process spawning bug that occurs in some systems

  simonhmartin

  committed
  ce96eb8

• Fixed recursive process spawning bug that occurs in some systems

  simonhmartin

  committed
  0477deb

• removed old file

  simonhmartin

  committed
  3896927

• Fixed recursive process spawning bug that occurs in some systems

  simonhmartin

  committed
  10430d4

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