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Commits on Jan 16, 2018

• r655: options to map to one strand of the ref lh3#91

  lh3

  committed
  33f8157

Commits on Jan 9, 2018

• Released minimap2-2.7 (r654)

  lh3

  committed
  eecc060

Commits on Jan 8, 2018

• r653: the last change may write "N" wrongly

  lh3

  committed
  dfea113

• allow to exclude regions

  lh3

  committed
  1842d7f

• r651: incorrectly treat introns as deletions

  Show description for f5cfd43
  lh3

  committed
  f5cfd43

• work with targets in BED12

  lh3

  committed
  248b43c

Commits on Jan 7, 2018

• added a bed counter

  Show description for bf72969
  lh3

  committed
  bf72969

• support paired-end reads

  Show description for 7b5a601
  lh3

  committed
  7b5a601

Commits on Jan 6, 2018

• don't test python v3.3

  lh3

  committed
  405d531

• allow to convert read names

  Show description for e9607fc
  lh3

  committed
  e9607fc

• bug in block starts; added color and short-name

  lh3

  committed
  a465a92

Commits on Jan 5, 2018

• more robust ID conversion

  lh3

  committed
  b20839b

• convert EnsEMBL to UCSC name (optional)

  lh3

  committed
  209beb9

• convert GTF/GFF3 to BED12

  lh3

  committed
  cfe87f5

Commits on Jan 2, 2018

• deleted duplicated entries

  lh3

  committed
  680b971

Commits on Dec 31, 2017

• added PHONY and comments to makefile

  lh3

  committed
  6b0d3c1

• r639: changed -O/-E validation

  lh3

  committed
  dc9e3dc

Commits on Dec 30, 2017

• r638: disabled scoring checking

  Show description for cc75c12
  lh3

  committed
  cc75c12

Commits on Dec 25, 2017

• new section on HPC k-mers

  lh3

  committed
  f159e1c

Commits on Dec 24, 2017

• renamed paf2ovlp to ov-eval

  lh3

  committed
  3a375d3

• evaluate sensitivity in the same script

  lh3

  committed
  626f10e

• find reads overlaps based on reference alignment

  lh3

  committed
  b997578

• fixed two minor typos in references

  lh3

  committed
  ce8a48d

• a new section on estimating sequence divergence

  lh3

  committed
  99879e9

• updated direct RNA-seq results; cite syndip

  Show description for c969d1a
  lh3

  committed
  c969d1a

Commits on Dec 19, 2017

• clarify ARM-NEON support in README

  lh3

  committed
  fcac296

• r629: API to construct index from strings

  lh3

  committed
  e420b17

Commits on Dec 16, 2017

• Merge pull request lh3#81 from hasindu2008/master

  Show description for 23a846c
  lh3

  authored
  23a846c

Commits on Dec 15, 2017

• added support for arm neon

  hasindu2008

  committed
  8995e2e

Commits on Dec 13, 2017

• r626: function to check incorrect scoring system

  lh3

  committed
  ab345e6

• r625: HPC sketch still has one minor issue

  lh3

  committed
  d003a00

• added esterr.o dependencies

  lh3

  committed
  ae85dcd

Commits on Dec 12, 2017

• Release minimap2-2.6 (r623)

  lh3

  committed
  eb819c2

Commits on Dec 11, 2017

• r622: fixed bug in sdust due to recent refactor

  lh3

  committed
  fb630de

• r621: --print-qname also shows kalloc status

  lh3

  committed
  43960a8

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