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Commits on Aug 10, 2024

• Updated README, added some clarifications, and fixed some typos

  smarco

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Commits on Apr 25, 2024

• Merge pull request #92 from pjotrp/main

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  smarco

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Commits on Apr 24, 2024

• Merge branch 'smarco:main' into main

  pjotrp

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Commits on Apr 22, 2024

• Error output: minor bug in output where O1 is suggested twice

  pjotrp

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Commits on Apr 20, 2024

• Merge pull request #91 from pjotrp/main

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  smarco

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• Pass path in of build dir so vcflib can find the benchmark binary

  pjotrp

  committed
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• CMake can now build the benchmark and run the tests 'natively'. This is used by vcflib.

  pjotrp

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• benchmark: disable test when OPENMP is not linked in

  pjotrp

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• Minor fixes to test with vcflib:

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  pjotrp

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• Have git ignore test output

  pjotrp

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• Added time dependency for tests

  pjotrp

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Commits on Apr 19, 2024

• Merge pull request #90 from 8051Enthusiast/development

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  smarco

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• Remove unused headers

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  8051Enthusiast

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Commits on Mar 31, 2024

• Merge pull request #89 from rlorigro/main

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  smarco

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• Remove commented block

  rlorigro

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• Fixed uninitialized memory error (making valgrind unhappy) (fixes #87)

  smarco

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• Fixed parsing cmdline for ends-free parameters

  smarco

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Commits on Dec 14, 2023

• Switch to types.h

  rlorigro

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Commits on Sep 30, 2023

• Fixed define (gcc complaining) and label on align-bench

  smarco

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Commits on Sep 27, 2023

• Merge pull request #85 from mencian/endian_patch

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Commits on Sep 26, 2023

• Fix endian.h build error on MacOS

  mencian

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Commits on Sep 25, 2023

• Merge remote-tracking branch 'origin/development'

  smarco

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• Patch to init last wavefront positions in case of (match!=0,ends-free) (fixes #84)

  smarco

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• Merge remote-tracking branch 'origin/development'

  smarco

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• Added extension mode to align_benchmark (for testing)

  smarco

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• Merge pull request #83 from twrightsman/fix-headers

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Commits on Sep 19, 2023

• Add more includes to header files

  twrightsman

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Commits on Aug 11, 2023

• Implemented BIG_ENDIAN compliant extend (tries to resolve #79)

  smarco

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• Merge branch 'main' into development

  smarco

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Commits on Aug 10, 2023

• Merge pull request #77 from ctsa/upstream_init_fix

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  smarco

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• Updated generate_dataset README (resolves #78)

  smarco

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Commits on Jul 20, 2023

• Fix uninitialized memory issues in valgrind

  ctsa

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Commits on Jul 17, 2023

• Added clean script for tests

  smarco

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• Changed align_benchmark general global-timer to measure benchmark call (without I/O) to be more informative. Alignment-timer remains the same.

  smarco

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Commits on Jun 29, 2023

• Fixed bug when using biwfa and wf-adaptive heuristics (off-grid indel2indel breakpoint)

  smarco

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