install_scWGCNA.Rmd

# WGCNA installation

1. First create a new conda environment for R:

`conda create -n scWGCNA -c conda-forge r-base r-essentials`

2. Install Bioconductor, install/update all:

```r
install.packages('BiocManager')
BiocManager::install()
```

3. Install Seurat

```r
install.packages('Seurat')
```

4. Install Other R dependencies

* Haromony
* UCell
* igraph (is it already instealled?)
* qgraph (definitely make this one optional)
* TF packages (optional as well)
  - GenomicRanges
  - motifmatchr