Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Sep 8, 2023

• metaquast: cosmetic-feature: --no-krona option added (workaround for ablab#216, ablab#237, ablab#246, ablab#251)

  alexeigurevich

  committed
  2723558

  Copy full SHA for 2723558

Commits on Apr 24, 2023

• feature: reporting misassemblies in GFF3

  alexeigurevich

  committed
  2bd5060

  Copy full SHA for 2bd5060

Commits on Mar 28, 2023

• Cosmetic: better section titles in report.html

  alexeigurevich

  committed
  ffb31d2

  Copy full SHA for ffb31d2

Commits on Jun 7, 2022

• cosmetics: fixed error message on incorrect usage of read files options

  alexeigurevich

  committed
  98e0bec

  Copy full SHA for 98e0bec

• busco: handling augustus versions properly, default is 3.2.3

  alexeigurevich

  committed
  8704550

  Copy full SHA for 8704550

• pipeline: new option "-report-all-metrics" added

  alexeigurevich

  committed
  7d94c96

  Copy full SHA for 7d94c96

• reporting: do not show NAx-like metrics if nothing aligned at all

  alexeigurevich

  committed
  efc98ab

  Copy full SHA for efc98ab

• metaquast: bugfix (critical): do not crash if nothing aligned to an explicitly specified reference (related to 9001e55)

  alexeigurevich

  committed
  e0c34b0

  Copy full SHA for e0c34b0

Commits on Jun 6, 2022

• docs: cosmetic: one more release day shift

  alexeigurevich

  committed
  7386d2d

  Copy full SHA for 7386d2d

• core: changed minimap2 preset for min-IDY in [95,99) from asm5 to asm10 ablab#209

  alexeigurevich

  committed
  1c9db32

  Copy full SHA for 1c9db32

• tests: thresholds updated to make all tests passing again (after meaningful manual analysis of all discrepancies!)

  alexeigurevich

  committed
  ee5fa5e

  Copy full SHA for ee5fa5e

• cosmetic: handling specific error with multi-threading on py3.8+ on macOS ablab#175

  alexeigurevich

  committed
  142ffab

  Copy full SHA for 142ffab

• core: changed MAX_INDEL_LENGTH from 85 to 200 (affects alignment settings!), made it controllable via --local-mis-size

  alexeigurevich

  committed
  ef0b6e8

  Copy full SHA for ef0b6e8

• critical bug fix: do not set --fragmented all the time (otherwise we never handle circular genomes!)

  alexeigurevich

  committed
  5637d8c

  Copy full SHA for 5637d8c

Commits on Jun 3, 2022

• docs: splitting 5.1.0 into 5.2.0 and 5.1.0rc1 releases

  alexeigurevich

  committed
  a179cda

  Copy full SHA for a179cda

Commits on May 26, 2022

• cosmetic: Welcome 2022!

  alexeigurevich

  committed
  f5d7116

  Copy full SHA for f5d7116

• docs: installation section updated in the manual

  alexeigurevich

  committed
  7e1d697

  Copy full SHA for 7e1d697

• qutils: allow dashes in contig names ablab#179

  alexeigurevich

  committed
  3d32101

  Copy full SHA for 3d32101

• busco: newer augustus to download, support conda-installed one, and better workaround suggestions in general

  alexeigurevich

  committed
  6a61a2e

  Copy full SHA for 6a61a2e

• docs: cosmetics: note on 32-bit Linux

  alexeigurevich

  committed
  a4c139a

  Copy full SHA for a4c139a

• cosmetic: better error message if minimap2 binary is present but corrupted ablab#154

  alexeigurevich

  committed
  22c3559

  Copy full SHA for 22c3559

• cosmetics: logging about UpperBoundAssembly IS fixed

  alexeigurevich

  committed
  73de6a8

  Copy full SHA for 73de6a8

• docs: CHANGES: BSS speed up described

  alexeigurevich

  committed
  c675391

  Copy full SHA for c675391

• docs: FAQ Q17: PyPy suggested for speed up ablab#200

  alexeigurevich

  committed
  175a830

  Copy full SHA for 175a830

• genemark keys updated

  alexeigurevich

  committed
  332569f

  Copy full SHA for 332569f

• auN metrics: rounding to 1 decimal point, slightly fixed order in reports

  alexeigurevich

  committed
  648dd38

  Copy full SHA for 648dd38

• docs: auN-like metrics described in the manual

  alexeigurevich

  committed
  62d3a06

  Copy full SHA for 62d3a06

• docs: version and manual updated for 5.1.0

  alexeigurevich

  committed
  b3259ce

  Copy full SHA for b3259ce

• docs: CHANGES updated for 5.1.0

  alexeigurevich

  committed
  6111362

  Copy full SHA for 6111362

• misc: SILVA db updated to 138.1

  alexeigurevich

  committed
  6e704fe

  Copy full SHA for 6e704fe

• Merge pull request ablab#172 from lovishpuri/fix/105

  Show description for 6c06f10
  alexeigurevich

  authored
  6c06f10

  Copy full SHA for 6c06f10

• Merge pull request ablab#200 from uncerso/performance_improvement

  Show description for a3b2b90
  alexeigurevich

  authored
  a3b2b90

  Copy full SHA for a3b2b90

Commits on Feb 10, 2022

• misc: embedded GeneMark license updated

  alexeigurevich

  committed
  de7e1f4

  Copy full SHA for de7e1f4

• remove "not support wheels" error

  almiheenko

  committed
  634bd98

  Copy full SHA for 634bd98

Commits on Feb 9, 2022

• correct calculation of total reads number (issue ablab#177)

  almiheenko

  committed
  c39d42a

  Copy full SHA for c39d42a

Pagination

Previous

Next