This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".

scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics

COMET Single-Cell Marker Detection tool

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available …

Bench-marking classification tools for scRNA-seq data

A portable and fast single cell type identifier

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Reference mapping for single-cell genomics

Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation

Consensus and Scalable Interpretations of Gene Expression Programs in Single Cells