Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

NEURON Simulator

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Code for the ProteinMPNN paper

mgatk: mitochondrial genome analysis toolkit

Visualization and analysis software for Hi-C data -

MMseqs2: ultra fast and sensitive search and clustering suite

Making Protein folding accessible to all!

RNA-seq aligner

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MACS -- Model-based Analysis of ChIP-Seq

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Remote protein homology detection suite.

This package contains deep learning models and related scripts for RoseTTAFold

R toolkit for single cell genomics

The ViennaRNA Package

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments