Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

Clustering scRNAseq by genotypes

Code repository for "Environmental and genetic drivers of population differences in SARS-CoV-2 immune responses" by Aquino et al.

Demultiplexing pipeline with demuxlet for the brain project (hg38)

Helper tools for popscle

A repo to share scripts/data related to genetic demultiplexing of pooled single cell functional genomics data

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

A tool for detecting somatic variants in single cell data

An ensemble variant calling pipeline handling either DNA or RNA seq datasets.