install.R

### install regular packages
install.packages("reticulate", repos = "http://cran.us.r-project.org") # python support in RMarkdown
install.packages("ggplot2",repos = "http://cran.us.r-project.org") # for plotting
install.packages(c("rmarkdown",  "devtools", "caTools", "bitops"),repos = "http://cran.us.r-project.org") # for knitting

install.packages(
  c(
  "Rcpp", "magrittr","dplyr",
  "RcppEigen",
  "magic",
  "misc3d",
  "pander",
  "pixmap",
  "png",
  "rsvd",
  "V8",
  "colormap",
  "viridis",
    "abind",
    "fastICA",
    "fpc",
    "igraph",
    "keras",
    "knitr",
    "mvtnorm",
    "pander",
    "pracma",
    "prettydoc",
    "R6",
    "reticulate",
    "tensorflow",
    "testthat",
    "tfruns",
    "visreg",
    "zeallot"),repos = "http://cran.us.r-project.org"
    )

# devtools::install_github("ANTsX/ANTsR" )
# devtools::install_github("ANTsX/ANTsRNet" )