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A Bayesian model for compositional single-cell data analysis

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SCDCdm - Single-cell differential composition analysis

SCDCdm allows for identification of compositional changes in count data, especially scRNA-data. It also provides a framework for reading in and analyzing cell compositions directly from scanpy

The statistical methods used are described in:

Johannes Ostner: Development of a statistical framework for compositional analysis of scRNA data

For further information, please refer to the documentation and the tutorials.

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  • Jupyter Notebook 81.0%
  • Python 19.0%