Cann't use.

[helloworldABCD1234]

Before you report an issue...

• [ No] Have you searched for a duplicate report?
• [ No] Have you replicated the problem on the latest release?
• [ No] Have you checked the latest documentation?
• [ No] Are you using an up-to-date system?

Only issues that can be replicated on the latest release, or development branch, of SingularityCE will be investigated and fixed. The open source project does not maintain long-term stable branches or fix bugs in prior versions. If you require LTS support then please see the Sylabs website.

Version of Singularity

What version of Singularity are you using? Run:

singularity-ce version 4.2.1

A clear and concise description of what the bug is.

singularity shell sra-tools_2.11.3.sif
WARNING: failed to set O_CLOEXEC flags on image
WARNING: failed to set O_CLOEXEC flags on image
WARNING: failed to set O_CLOEXEC flags on image
ERROR : Failed to set securebits: Invalid argument

A clear and concise description of what you expected to happen.

Linux ubuntu

Which Linux distribution are you using? Is it up-to-date?

wsl ubuntu from window software shop

Installation Method

I download singularity-ce-4.2.1.tar.gz and use the command "./mconfig make make install " to install

Additional context

Anything else which might be relevant. E.g. if the bug only occurs on a specific filesystem, or kernel version etc.

[dtrudg]

1. Check that you are using WSL2 - not WSL1. The original WSL1 Linux environment does not use a full Linux kernel, and doesn't support many of the system calls that Singularity needs. Run wsl -l -v in a powershell / windows console window to check.

2. Try installing the .deb package (for the version of Ubuntu you are using) that's on the release page.