GitHub - theboocock/bwa at 72563c38f383b4d3df444caaf5cfb8327ab629a3

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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

GPL-3.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
bwt_gen		bwt_gen
.gitignore		.gitignore
COPYING		COPYING
ChangeLog		ChangeLog
Makefile		Makefile
NEWS		NEWS
README		README
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa.1		bwa.1
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtio.c		bwtio.c
bwtmisc.c		bwtmisc.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
cs2nt.c		cs2nt.c
is.c		is.c
khash.h		khash.h
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
kvec.h		kvec.h
main.c		main.c
main.h		main.h
qualfa2fq.pl		qualfa2fq.pl
simple_dp.c		simple_dp.c
solid2fastq.pl		solid2fastq.pl
stdaln.c		stdaln.c
stdaln.h		stdaln.h
utils.c		utils.c
utils.h		utils.h

Repository files navigation

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  [email protected]

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.ncbi.nlm.nih.gov/pubmed/20080505
  http://www.ncbi.nlm.nih.gov/pubmed/19451168

Incomplete list of citations (via HubMed.org):

  http://www.hubmed.org/references.cgi?uids=20080505
  http://www.hubmed.org/references.cgi?uids=19451168