get_start.R function

[yunpengl9071]

Hi, I noticed that the get_start.R function calls the get_hmm_order function at line 17 and in line 18 it needs an output from get_hmm_order (re$p). However, when looking at get_hmm.R I cannot seem to find 'p' as a component of the output (rr). From what I understand this is used for comparing the likelihoods computed from applying the Viterbi algorithm on different rotations of the cell order indices. It seemed to work fine when I added that component to the end of get_hmm.R. Is this what it is meant to do?

[oharismendy]

I have a similar problem. I cannot get get_start to run. Hopefully the developers can address this.

[dgoekbuget]

+1
getting "Error: $ operator is invalid for atomic vectors" using example workflow.

[PBXkevin]

+1
getting "Error: $ operator is invalid for atomic vectors" using example workflow.

[ShuqingL]

+1
I think just remove "$p" should be run normally. But I do not read the code seriously, is it right, I don't know.