NAMESPACE

# Generated by roxygen2: do not edit by hand

export(adj2igraph)
export(adjacency)
export(bootEnsemble)
export(bootVote)
export(cisTrans)
export(cvPerf)
export(cvVote)
export(initFit)
export(modEnrich)
export(nonZeroUpper)
export(nonZeroWhole)
export(rankHub)
export(reportHubs)
export(reportJointPerf)
export(reportPerf)
export(space)
export(spacemap)
export(tuneVis)
export(xHubEnrich)
import(Rcpp)
import(RcppArmadillo)
importClassesFrom(S4Vectors,Rle)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,countOverlaps)
importFrom(GenomicRanges,findOverlaps)
importFrom(Matrix,Matrix)
importFrom(Matrix,t)
importFrom(Rcpp,evalCpp)
importFrom(foreach,"%:%")
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,qplot)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(igraph,"%--%")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_adj)
importFrom(igraph,as_data_frame)
importFrom(igraph,as_ids)
importFrom(igraph,degree)
importFrom(igraph,edge_attr)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,membership)
importFrom(igraph,set_edge_attr)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,vertex_attr)
importFrom(reshape2,melt)
importFrom(rngtools,RNGseq)
importFrom(rngtools,setRNG)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,phyper)
importFrom(stats,sd)
importFrom(utils,combn)
useDynLib(spacemap)