Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Epidemiology analysis package

Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.

MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling

Info/Data (global/italy) about COVID-19. PR welcome for other countries.

🌏🌎🌍 Liberate Google Takeout location data for epidemiological research and local contact tracing https://epi-collect.org

Data analysis for colorectal cancer projects, mainly using metabolomics data.

Curso Intermediário de R para análise de situação de saúde

Game theoretical modelling of COVID-19 vaccine adoption

Code for paper by Corbett, Schongalla, and Moen, about relationships between firearm ownership rates, mental health provider density, and firearm fatality rates.

Genomic Epidemiology of SARS-CoV-2 in Pakistan

Network data analysis using networkx, and gephi for visualisations.

Data analysis and modeling of the COVID-19 propagation dynamics

Data analysis focusing on health problems

An epidemic stimulator, developed and built by brute force to learn more on biological systems.

Inverse probability weighting for non-binary exposures. Simple example in Excel and SAS.

A SEIRS-NIMFA compartmental epidemiological model implementation adapted for the analysis of IoT network malware propagation

Fitting GPs to count data for non-linear regression of epi-curves

Scripts for analysis of metabolomics data relating to nutrition, health and disease in the EPIC study.