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Commits on Jun 28, 2012

• r131: r128 plus remote changes

  lh3

  committed
  3abfd07

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• Merge branch 'master' of github.com:lh3/bwa

  lh3

  committed
  fa51f02

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• r128: more conservative chaining filter

  lh3

  committed
  f44edd4

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• resolve duphits after right extension as well

  lh3

  committed
  0ae318b

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Commits on Jun 26, 2012

• Merge pull request lh3#11 from sjackman/inline

  Show description for f89649e
  

  Heng Li

  committed
  f89649e

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Commits on Jun 25, 2012

• Do not inline functions used externally

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  sjackman

  committed
  84d34e1

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Commits on Jun 19, 2012

• r126: release bwa-0.6.2

  lh3

  committed
  09ee115

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• rename the "api" branch as "master"

  lh3

  committed
  29ed2d8

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Commits on Apr 18, 2012

• r124: updated version number

  lh3

  committed
  d97ff6b

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• Merge branch 'master' into api

  lh3

  committed
  72f1a95

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• r115: added -I and -S to bwasw

  lh3

  committed
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Commits on Apr 17, 2012

• unnecessary large .sai output

  lh3

  committed
  4f61e2b

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Commits on Apr 8, 2012

• updated APIs abit

  lh3

  committed
  9c486fa

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• simplified bwa_se() interface

  lh3

  committed
  3b5a9e5

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• complete single-end alignment

  lh3

  committed
  ca93a71

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• preliminary doc

  lh3

  committed
  080726c

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• compute CIGAR; rev seq not working

  lh3

  committed
  1cef219

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Commits on Apr 7, 2012

• towards refined gapped; unfinished

  lh3

  committed
  66154ff

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• API: aln seems working

  lh3

  committed
  a1abfe9

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Commits on Apr 2, 2012

• commented out debugging code

  lh3

  committed
  cff4733

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• updated revision number

  lh3

  committed
  790df95

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• bugfix: incorrect bandwidth

  lh3

  committed
  36f2fd6

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• debugging; bug persistant

  lh3

  committed
  d316980

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• debugging code: bwasw has a rare bug

  lh3

  committed
  173b93d

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Commits on Mar 29, 2012

• check *.64.bwt first and then *.bwt

  lh3

  committed
  d33abf1

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• do not use .64 suffix by default

  lh3

  committed
  c875085

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• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

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Commits on Mar 19, 2012

• bugfix: long-existing out-of-boundary bug

  lh3

  committed
  a471f19

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Commits on Nov 28, 2011

• Release bwa-0.6.1

  

  Heng Li

  committed
  91a4a0c

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• bugfix: bwa-sw PE segfault in rare case

  

  Heng Li

  committed
  64e353c

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Commits on Nov 25, 2011

• fastmap: optionally output the original query seq

  

  Heng Li

  committed
  bf65b64

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• fixed a deadlock; SMEM iterator

  

  Heng Li

  committed
  150bfbd

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Commits on Nov 24, 2011

• output the NM tag

  

  Heng Li

  committed
  b5170e0

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• fixed a minor issue in trimming

  

  Heng Li

  committed
  717959e

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• perhaps improves samse/sampe

  

  Heng Li

  committed
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