Request for Guidance in Step 1 to Step 3 of step2_pepBDB_pep_bindingsites.py

[SyedKumailHussainNaqvi]

Hello @twopin
I am writing to respectfully request your kind guidance and expertise in the execution of steps 1 to 3 in the script "step2_pepBDB_pep_bindingsites.py."
I have encountered certain complexities and uncertainties in steps 1 to 3 of the mentioned script.
I kindly request your support in the form of guidance, suggestions, or any relevant resources that may assist me in overcoming these hurdles. Your professional insights and expertise would greatly contribute to my learning process, enabling me to gain a comprehensive understanding of steps 1 to 3 in the "step2_pepBDB_pep_bindingsites.py" script.
Thank you in advance for considering my request.