sheepdog

Installation

For General Usage

To install sheepdog, ensure you have poetry installed and run:

poetry install

Minimal Usage Example

import sheepdog
import datamodelutils
from dictionaryutils import dictionary
from gdcdictionary import gdcdictionary
from gdcdatamodel import models, validators

dictionary.init(gdcdictionary)
datamodelutils.validators.init(validators)
datamodelutils.models.init(models)
blueprint = sheepdog.create_blueprint(name='submission')

app = Flask(__name__)
app.register_blueprint(blueprint)

Documentation

Sphinx

Auto-documentation is set up using Sphinx. To build it, run

cd docs
make html

which by default will output the index.html page to docs/build/html/index.html.

Swagger

OpenAPI documentation available here.

The YAML file containing the OpenAPI documentation is in the openapi folder; see the README in that folder for more details.

Gen3 graph data flow