phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

Accurate sample inference from amplicon data with single nucleotide resolution

An R package for data analysis in microbial community ecology

A repository for large-scale microbiome datasets, formatted for phyloseq

Plot microbiome time series in parallel

A comprehensive and customizable R package for microbiome analysis.

PIME: A package for discovery of novel differences among microbial communities

R and Stan code for: https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.13072

Age related changes in social integration with age in wild adult chimpanzees

data for EloSteepness