diff --git a/data/releases3.json b/data/releases3.json
index 133b63ad..55040f5a 100644
--- a/data/releases3.json
+++ b/data/releases3.json
@@ -165,6 +165,18 @@
             "asset_error": false
         },
         "releases": [
+            {
+                "name": "v4.0.0-beta.3",
+                "body": "#### Added\r\n- support browser caching of analysis retrieval (`GET`) requests\r\n\r\n#### Changed\r\n- miscellaneous minor aesthetic improvements\r\n- simplify unnecessarily complicated reference export mechanism\r\n\r\n#### Fixed\r\n- fix **Add Sequence** dialog not opening\r\n- fix bad subtraction link in Pathoscope mapping overview\r\n- fix missing settings errors when starting with `--no-setup`\r\n- fix unrounded median values (#1833)",
+                "prerelease": true,
+                "published_at": "2020-05-13T16:44:13Z",
+                "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.3",
+                "filename": "virtool.tar.gz",
+                "content_type": "application/gzip",
+                "size": 69015400,
+                "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.3/virtool.tar.gz",
+                "asset_error": false
+            },
             {
                 "name": "v4.0.0-beta.2",
                 "body": "#### Fixed\r\n- fix exception about missing `sentry_sdk` module",
diff --git a/static/releases3 b/static/releases3
index 6c76657c..42eb6ba9 100644
--- a/static/releases3
+++ b/static/releases3
@@ -1 +1 @@
-{"ref_plant_viruses": [{"name": "v1.4.0", "body": "- add isolates for Strawberry vein banding virus\r\n- add isolates for Strawberry mottle virus\r\n- add isolates for Strawberry mild yellow edge virus\r\n- add isolates for Nectarine stem pitting-associated virus\r\n- add isolate for Cherry green ring mottle virus\r\n- add isolates for Little cherry virus 2\r\n- add isolates for Little cherry virus 1\r\n- add isolates for Asian prunus virus 3\r\n- add isolates for Asian prunus virus 2\r\n- add isolates for Asian prunus virus 1", "prerelease": false, "published_at": "2019-06-04T18:20:58Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.4.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 4008271, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.4.0/reference.json.gz", "asset_error": false}, {"name": "v1.3.1", "body": "- add missing schema fields to all OTUs\r\n- improve testing\r\n- reduce reference size by not indenting data\r\n", "prerelease": false, "published_at": "2019-02-18T21:07:02Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.3.1", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3907351, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.3.1/reference.json.gz", "asset_error": false}, {"name": "v1.3.0", "body": "- add Actinidia chlorotic ringspot associated virus\r\n- add Actinidia virus 1\r\n- add Agave tequilana leaf virus\r\n- add Alfalfa leaf curl virus\r\n- add Alfalfa virus S\r\n- add Alstroemeria yellow spot virus\r\n- add Apple necrotic mosaic virus\r\n- add Arracacha virus 1\r\n- add Atractylodes mottle virus\r\n- add Babaco mosaic virus\r\n- add Beet ringspot virus\r\n- add Bellflower veinal mottle virus\r\n- add Bermuda grass latent virus\r\n- add Blackberry virus A\r\n- add Blackcurrant-associated closterovirus 1\r\n- add Bottle gourd mottle virus\r\n- add Broad-leafed dock virus A\r\n- add Calla lily chlorotic spot virus\r\n- add Camellia chlorotic dwarf-associated virus\r\n- add Cardamom mosaic virus\r\n- add Cassava virus X\r\n- add Cherry associated luteovirus\r\n- add Cherry virus trakiya\r\n- add Chrysanthemum virus R\r\n- add Clerodendrum chlorotic spot virus\r\n- add Cnidium vein yellowing virus 1\r\n- add Cnidium vein yellowing virus 2\r\n- add Colombian potato soil-borne virus\r\n- add Corn salad necrosis virus\r\n- add Cowpea polerovirus 1\r\n- add Cowpea polerovirus 2\r\n- add Curcurbit vein banding virus\r\n- add Currant virus A\r\n- add Cymbidium chlorotic mosaic virus\r\n- add Emilia yellow vein virus-[fz1]\r\n- add Ethiopia maize-associated virus\r\n- add Euphorbia caput-medusae latent virus\r\n- add Gomphocarpus mosaic virus\r\n- add Grapevine associated Tymo-like virus\r\n- add Grapevine enamovirus-1\r\n- add Grapevine leafroll-associated virus 13\r\n- add Grapevine virus J\r\n- add Grapevine virus I\r\n- add Helenium virus S\r\n- add Hibiscus-infecting cilevirus\r\n- add Hop yellow virus\r\n- add Hoya chlorotic spot virus\r\n- add Ixeridium yellow mottle virus 2\r\n- add Jasmine mosaic-associated virus 2\r\n- add Jasmine mosaic-associated virus 1\r\n- add Jasmine virus C\r\n- add Jasmine virus H\r\n- add Jasmine virus T\r\n- add Ligustrum virus A\r\n- add Lychnis mottle virus\r\n- add Melon chlorotic spot virus\r\n- add Melon severe mosaic tospovirus\r\n- add Mulberry mosaic leaf roll-associated virus\r\n- add Mume virus A\r\n- add Naranjilla mild mosaic virus\r\n- add Narcissus virus 1\r\n- add Olive latent ringspot virus\r\n- add Papaya cytorhabdovirus\r\n- add Peach associated luteovirus\r\n- add Peach chlorotic leaf spot virus\r\n- add Peach leaf pitting-associated virus\r\n- add Peanut virus C\r\n- add Pecan mosaic-associated virus\r\n- add Pepper chlorotic spot virus\r\n- add Pleione flower breaking virus\r\n- add Potato necrosis virus\r\n- add Potato virus U\r\n- add Privet leaf blotch-associated virus\r\n- add Red clover associated virus 1\r\n- add Redbud yellow ringspot-associated virus\r\n- add Ribes americanum virus A\r\n- add Rice stripe mosaic virus\r\n- add Salvia divinorum RNA virus 1\r\n- add Sambucus virus S\r\n- add Sugarcane chlorotic streak virus\r\n- add Tea plant necrotic ring blotch virus\r\n- add Temperate fruit decay-associated virus\r\n- add Tetterwort vein chlorosis virus\r\n- add Tomato apical leaf curl virus\r\n- add Tomato mottle leaf curl virus\r\n- add Turtle grass virus X\r\n- add Vanilla latent virus\r\n- add White clover mottle virus\r\n- add Wild melon vein banding virus\r\n- add Wild onion symptomless virus\r\n- add Yacon virus A\r\n- add Yam chlorotic necrotic mosaic virus\r\n- add Blackcurrant leafroll-associated virus 1", "prerelease": false, "published_at": "2019-02-01T21:17:34Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.3.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3933199, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.3.0/reference.json.gz", "asset_error": false}, {"name": "v1.2.0", "body": "- add Alfalfa virus F\r\n- add Apple-associated luteovirus\r\n- add Arracacha virus V\r\n- add Arracacha virus Y\r\n- add Barley virus G\r\n- add Black currant leaf chlorosis-associated virus\r\n- add Blackberry virus F\r\n- add Blueberry latent sperical virus\r\n- add Caucasus prunus virus\r\n- add Cherry virus B\r\n- add Cherry virus F\r\n- add Citrus mosaic sadwavirus\r\n- add Daphne virus Y\r\n- add Elderberry carlavirus A\r\n- add Elderberry carlavirus B\r\n- add Elderberry carlavirus D\r\n- add Elderberry carlavirus E\r\n- add Grapevine badnavirus 1\r\n- add Grapevine fanleaf virus satellite RNA\r\n- add Grapevine roditis leaf discoloration-associated virus\r\n- add Ixeridium yellow mottle virus 1\r\n- add Panicum distortion mosaic virus\r\n- add Passion fruit chlorotic mottle virus\r\n- add Peach virus D\r\n- add Pepper enamovirus\r\n- add Pepper virus A\r\n- add Petunia chlorotic mottle virus\r\n- add Platycodon mild mottle virus\r\n- add Salvia hispanica RNA virus 1\r\n- add Soybean latent spherical virus\r\n- add Squash chlorotic leaf spot virus\r\n- add Tomato mild mottle virus\r\n- add Tomato necrotic streak virus\r\n- add Vanilla virus X\r\n- add Watermelon bud necrosis virus\r\n- add Watermelon crinkle leaf associated virus 1\r\n- add Watermelon virus A\r\n- add Wild Vitis virus 1\r\n- remove trailing spaces from some OTU names", "prerelease": false, "published_at": "2019-01-30T19:37:05Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.2.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3626596, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.2.0/reference.json.gz", "asset_error": false}, {"name": "v1.1.0", "body": "- Add Aeonium ringspot virus\r\n- Add Alfalfa enamovirus 1\r\n- Add Arachis pintoi virus\r\n- Add Areca palm necrotic spindle-spot virus\r\n- Add Cacao mild mosaic virus\r\n- Add Apple hammerhead viroid-like circular RNA\r\n- Add Cacao yellow vein-banding virus\r\n- Add Citrus chlorotic spot virus\r\n- Add Citrus concave gum-associated virus\r\n- Add Coffee ringspot virus\r\n- Add Dioscorea nummularia-associated virus\r\n- Add Elderberry carlavirus\r\n- Add Grapevine fabavirus\r\n- Add Grapevine virus G\r\n- Add Grapevine virus K\r\n- Add Hobart betaflexivirus 1\r\n- Add Maize striate mosaic virus\r\n- Add Opium poppy mosaic virus\r\n- Add Palo verde broom virus\r\n- Add Paris mosaic necrosis virus\r\n- Add Passiflora edulis symptomless virus\r\n- Add Rice virus A\r\n- Add Senna mosaic virus\r\n- Add Tea plant line pattern virus\r\n- Add Watermelon crinkle leaf-associated virus 2\r\n- Add Tobacco mosqueado virus", "prerelease": false, "published_at": "2018-12-14T21:12:43Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.1.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3530937, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.1.0/reference.json.gz", "asset_error": false}, {"name": "v1.0.2", "body": "- add 1 isolate for Tobacco mosaic virus", "prerelease": false, "published_at": "2018-11-29T22:57:49Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.2", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3448888, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.2/reference.json.gz", "asset_error": false}, {"name": "v1.0.1", "body": "#### Changed\r\n- Added Apple rubbery wood virus 1\r\n- Added Apple rubbery wood virus 2\r\n- Added Grapevine virus H\r\n- Added 23 isolates for Grapevine virus T\r\n- Added 4 isolates for Grapevine leafroll-associated virus 1\r\n- Added 5 isolates for Grapevine leafroll-associated virus 2\r\n- Added 13 isolates for Grapevine leafroll-associated virus 3\r\n- Added 12 isolates for Grapevine pinot gris virus\r\n- Added 1 isolate for Grapevine syrah virus\r\n- Added 1 isolate for Raspberry bushy dwarf virus\r\n- Added more Tomato ringspot virus isolates\r\n- Removed 1 Apricot latent virus isolate", "prerelease": false, "published_at": "2018-11-29T20:15:42Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.1", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3542077, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.1/reference.json.gz", "asset_error": false}, {"name": "v1.0.0", "body": "- added all Genbank isolates for ASPV\r\n- fixed isolate names from some poorly named isolates\r\n- removed viruses and isolates used by the developers that haven't yet been published to Genbank\r\n- separated Apple stem pitting (ASPV) and Apricot latent viruses (ApLV)\r\n", "prerelease": false, "published_at": "2018-11-26T23:50:46Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3330865, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.0/reference.json.gz", "asset_error": false}], "virtool_hmm": [{"name": "v0.2.1", "body": "- remove some annotations that didn't have corresponding profiles", "prerelease": false, "published_at": "2017-11-10T19:12:43Z", "html_url": "https://github.com/virtool/virtool-hmm/releases/tag/v0.2.1", "filename": "vthmm.tar.gz", "content_type": "application/gzip", "size": 85904451, "download_url": "https://github.com/virtool/virtool-hmm/releases/download/v0.2.1/vthmm.tar.gz", "asset_error": false}, {"name": "v0.2.0", "body": "- the first release using TravisCI for building and testing\r\n- merge annotations and profiles into one archive", "prerelease": false, "published_at": "2017-11-10T00:27:20Z", "html_url": "https://github.com/virtool/virtool-hmm/releases/tag/v0.2.0", "filename": "vthmm.tar.gz", "content_type": "application/gzip", "size": 86059385, "download_url": "https://github.com/virtool/virtool-hmm/releases/download/v0.2.0/vthmm.tar.gz", "asset_error": false}], "virtool": [{"name": "v4.0.0-beta.2", "body": "#### Fixed\r\n- fix exception about missing `sentry_sdk` module", "prerelease": true, "published_at": "2020-04-25T19:14:46Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69015717, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-beta.1", "body": "#### Added\r\n- allow subtraction renaming\r\n- allow deletion of any subtraction, not just unused ones\r\n- automatically reconnect when server connection is lost (#1787, #1750)\r\n- make default subtractions for samples optional\r\n\r\n#### Changed\r\n- format JSON different depending on the request's `Accept` header\r\n- improve appearance of AODP joining chart y-axis (#1801)\r\n- improve appearance of OTU editor\r\n- improve appearance of user permission list\r\n- improve and harmonize appearance of analysis sorting buttons (#1779)\r\n- the term _Workflow_ will now replace _Algorithm_\r\n\r\n#### Fixed\r\n- fix appearance of pathoscope mapping overview\r\n- fix appearance of sequence close button in OTU editor (#1807)\r\n- fix broken coloring of history information icons\r\n- fix incorrect values in root (`GET /api`) response\r\n- fix revert icon being shown for history items that cannot be reverted (built changes)\r\n- fix gap in reference creation dialog (#1800)\r\n- fix Pathoscope analysis sort order for coverage and depth\r\n- improve speed of fetching Pathoscope results using caching (#1295)\r\n- improve and fix display of official reference installation message", "prerelease": true, "published_at": "2020-04-24T22:49:27Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68960514, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.7", "body": "#### Changed\r\n- improve Pathoscope result fetch times by caching coverage charts\r\n- make graph resizing consistent when browser size is changed\r\n- update button styling\r\n- update job progress bar coloring\r\n- update upload bar styling\r\n\r\n#### Fixed\r\n- fix issues when trying to delete multiple analyses or files\r\n- fix sessions expiring too early\r\n- remove extra OTU detail view header", "prerelease": true, "published_at": "2020-04-09T15:49:05Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.7", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68816145, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.7/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.6", "body": "#### Added\r\n- add descriptions for all AODP job steps\r\n\r\n#### Changed\r\n- filter AODP results by maximum OTU identity instead of minimum\r\n\r\n#### Fixed\r\n- fix clipping on sequence x-axis labels in NuVs viewer\r\n- fix problem with ORF graphics in NuVs viewer not resizing when window size changes\r\n- fix tiny tiny font size for login dialog error (#1786)\r\n", "prerelease": true, "published_at": "2020-04-06T21:20:57Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68824514, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.8", "body": "#### Added\r\n- report MongoDB version in API responses\r\n- add support and upgrade information to **Home** view\r\n\r\n#### Fixed\r\n- fix exception when creating samples with FASTQ files containing a lot of 3' Ns\r\n- resolve client security issue in dependency", "prerelease": false, "published_at": "2020-04-03T20:31:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.8", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69145188, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.8/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.5", "body": "#### Changed\r\n- show _no matches_ message when no AODP hits meet identity filter\r\n\r\n#### Fixed\r\n- fix crash when no AODP hits meet identity filter\r\n- prevent misleading fatal `git` error from writing to console during startup\r\n", "prerelease": true, "published_at": "2020-04-01T23:31:27Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68830921, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.7", "body": "#### Changed\r\n- include software libraries in distributable that are missing on some platforms\r\n- provide failing quality line when raising error during FastQC parsing", "prerelease": false, "published_at": "2020-04-01T15:27:13Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.7", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69146122, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.7/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.4", "body": "#### Changed\r\n- update Pathoscope viewer\r\n\r\n#### Fixed\r\n- fix crash when displaying AODP result\r\n- fix index list item appearance (#1770)\r\n- fix navigation bar appearance (#1768)\r\n", "prerelease": true, "published_at": "2020-03-31T16:33:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69054748, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.4/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.3", "body": "#### Added\r\n- add AODP result viewer (#1743)\r\n- add AODP analysis option in creation dialog (#1748)\r\n- implement AODP as a analysis algorithm\r\n\r\n#### Changed\r\n- update application appearance (#1685, #1703, #1711, #1712, #1714, #1717, #1729, #1736, #1743, #1749)\r\n- make view headers consistent\r\n- overhaul input interfaces\r\n- return `data_type` from API when fetching ready indexes\r\n- show 'None Found' when no targets assigned for barcode reference (#1720)\r\n\r\n#### Fixed\r\n- fix crash when client loads sample settings\r\n- fix error in remove schema segment dialog (#1724)\r\n- fix error when editing OTU sequence\r\n- fix error when OTU schema tab is viewed (#1709)\r\n- fix issues importing and exporting references (#1741)\r\n- fix issues in clone reference dialog (#1690)", "prerelease": true, "published_at": "2020-03-30T20:34:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69049803, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.7-beta.1", "body": "#### Fixed\r\n- fix incorrect subtraction counts for Pathoscope analyses (#1747)\r\n- fix platform-specific issues due to `cx-Freeze` package\r\n- upgrade packages with security issues\r\n", "prerelease": true, "published_at": "2020-03-20T00:18:38Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.7-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 64542303, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.7-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.6", "body": "#### Fixed\r\n- fix `0` always being shown as subtracted read count in Pathoscope viewer (#1735)\r\n- fix crash in browser when navigating to reference index list\r\n- fix default subtraction always being used for new analysis (#1735)\r\n- fix default subtraction name always shown in pathoscope viewer (#1735)\r\n- fix default subtraction always returned when fetching analysis from API (#1735)", "prerelease": false, "published_at": "2020-02-28T20:15:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50935040, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.5", "body": "#### Fixed\r\n- fix occasional crash in client when loading sample settings\r\n- fix dialog for adding users to reference (#1686)\r\n- fix issues when removing reference user groups\r\n- fix misspelling of 'Administrator' in user dropdown\r\n- fix icon padding in user administration detail header (#1688) \r\n- fix horizontal alignment in reference items in analysis dialog (#1689)", "prerelease": false, "published_at": "2020-02-12T17:42:04Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50933532, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.5/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.1", "body": "#### Added\r\n- add library type selection component in sample creation dialog (#1585)\r\n- add reference data type support to creation dialog (#1557)\r\n- add target editor component for barcode references (#1673)\r\n- check MongoDB server version on application start\r\n- support `library_type` input field for sample creation requests (replaces `srna` field`)\r\n- support `targets` input field for barcode reference edit requests for\r\n\r\n#### Changed\r\n- show **Library Type** in sample detail table (#1608)\r\n- show **Date Type** in reference detail table\r\n- support larger history records for large sequences or large remote reference OTUs\r\n- update **Build Index** job to support barcode analysis\r\n- update OTU editor to support barcode sequences (#1601, #1638)\r\n\r\n#### Fixed\r\n- fix uneven OTU editor sequence entry table column widths (#1665)\r\n- fix real-time updates that had incomplete information\r\n", "prerelease": true, "published_at": "2020-02-06T21:20:58Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50945364, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.4", "body": "#### Fixed\r\n- fix error when exporting pathoscope results\r\n- fix non-functional browser back (#1189, #1575)", "prerelease": false, "published_at": "2020-02-04T23:57:39Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50935287, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.3", "body": "#### Changed\r\n- allow browser uploads when file manager is disabled on server (supports MacOS hosts)\r\n- don't run file manager on start when operating system is incompatible (supports MacOS hosts)\r\n\r\n#### Fixed\r\n- fix client crashes in job detail view (#1651)\r\n- prevent flash of previously loaded analysis list or analysis detail (#1574)", "prerelease": false, "published_at": "2020-01-21T22:37:24Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50941782, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.2", "body": "#### Fixed\r\n- fix crashes in some views that include times\r\n- fix non-function job cleanup on application start", "prerelease": false, "published_at": "2020-01-14T18:42:26Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50930086, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.1", "body": "#### Fixed\r\n- fix scrolling issue in large lists", "prerelease": false, "published_at": "2020-01-13T21:22:32Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50945573, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.0", "body": "#### Added\r\n- add keyboard-based navigation to NuVs result viewer\r\n\r\n#### Changed\r\n- ensure application data folder is intact on every server start\r\n- make clone and remote reference panels consistent in appearance with sibling panels (#1639)\r\n\r\n#### Fixed\r\n- fix appearance of API documentation link in administrative settings (#1627)\r\n- fix client crash when there is no significant NuVs hit\r\n- fix contradictory Sentry setup messages in log output\r\n- fix incorrect modified OTU count being calculated for references\r\n- fix refresh issue during setup that made it unclear the server was being restarted (#1570)\r\n- fix server crash when caches data directory cannot be found\r\n- fix unhandled exception when writing settings to database during setup (#1530)", "prerelease": false, "published_at": "2020-01-13T19:34:50Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50940980, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.6", "body": "#### Fixed\r\n- resolve minor security issue in client", "prerelease": false, "published_at": "2020-01-06T19:18:37Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 51002502, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.5", "body": "#### Added\r\n- remove incomplete samples on application start\r\n\r\n#### Changed\r\n- improve job list item appearance\r\n- improve administrative user detail view\r\n\r\n#### Fixed\r\n- fix useless job remove and cancel icons (#1603)\r\n- fix visual bug in group list in administrative user interface (#1578)s", "prerelease": false, "published_at": "2019-12-19T20:47:28Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 51000786, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.4", "body": "#### Added\r\n- show user alert when trim cache files cannot be found\r\n\r\n#### Changed\r\n- create new trim cache during analysis when cache file cannot be found", "prerelease": false, "published_at": "2019-12-16T19:58:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50994357, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.3", "body": "#### Added\r\n- add API setting in web interface (#1558)\r\n\r\n#### Changed\r\n- fix checkbox alignment in source type form\r\n- improve application stability and testing\r\n- show Gitter chat link instead of Discord in navigation bar\r\n- update isolate editor appearance\r\n\r\n#### Removed\r\n- remove data table in OTU general info view\r\n\r\n#### Fixed\r\n- fix faulty API key authentication\r\n- fix faulty reference import functionality\r\n- fix security issue in `serialize-javascript` dependency\r\n- throttle sample creation requests to prevent duplicate submissions (#1547)\r\n- throttle remote reference creation requests to prevent duplicate submissions (#1569)\r\n", "prerelease": false, "published_at": "2019-12-11T00:08:10Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50994614, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.2", "body": "#### Changed\r\n- appearance improvements for some user interface components\r\n- prevent potential data loss when editing OTUs\r\n\r\n#### Fixed\r\n- fix incomplete parsing of Genbank definitions when fetching from NCBI (#1548)", "prerelease": false, "published_at": "2019-11-15T17:52:48Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50995600, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.1", "body": "#### Changed\r\n- prevent first user setup dialog from being too wide on large displays\r\n\r\n#### Fixed\r\n- fix BLAST spinner (#1520)\r\n- fix link justification in reference user and groups settings\r\n- fix various errors when viewing reference details (#1527, #1511, #1516, #1500)", "prerelease": false, "published_at": "2019-11-01T21:41:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44954699, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0", "body": "#### Added\r\n- allow choice of different subtraction for each analysis (#1231)\r\n- samples have **Default Subtraction** setting instead of hard-linked **Subtraction Host** (#1231)\r\n- show warning when sample files are unusually small (#1483)\r\n\r\n#### Changed\r\n- slight changes to user group administration dialog\r\n- update appearance of alerts\r\n- update appearance of isolate editor \r\n- update appearance of source type settings\r\n- update appearance of HMM, history, and files list items (#1473, #1492, #1481, #1461, #1472)\r\n- overhaul reference list items\r\n- minor changes and improvements to many user interface elements\r\n\r\n#### Fixed\r\n- fix text alignment in pathoscope mapping overview (#1474)\r\n- fix always depressed buttons\r\n- fix non-removal of FASTQ files after they are used to create a sample (#1484)", "prerelease": false, "published_at": "2019-10-21T18:22:06Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44958715, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.3", "body": "#### Changed\r\n- slight changes to user group administration dialog\r\n\r\n#### Fixed\r\n- fix subtraction selection issues in sample creation dialog", "prerelease": true, "published_at": "2019-10-17T21:02:23Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44953132, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.2", "body": "#### Fixed\r\n- fix unwarranted no host error in create sample modal (#1504)", "prerelease": true, "published_at": "2019-10-15T16:43:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44951038, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.1", "body": "#### Added\r\n- allow choice of different subtraction for each analysis (#1231)\r\n- samples have **Default Subtraction** setting instead of hard-linked **Subtraction Host** (#1231)\r\n- show warning when sample files are unusually small (#1483)\r\n\r\n#### Changed\r\n- update appearance of alerts\r\n- update appearance of isolate editor \r\n- update appearance of source type settings\r\n- update appearance of HMM, history, and files list items (#1473, #1492, #1481, #1461, #1472)\r\n- overhaul reference list items\r\n- minor changes and improvements to many user interface elements\r\n\r\n#### Fixed\r\n- fix text alignment in pathoscope mapping overview (#1474)\r\n- fix always depressed buttons\r\n- fix non-removal of FASTQ files after they are used to create a sample (#1484)\r\n", "prerelease": true, "published_at": "2019-10-09T17:51:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44956363, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.5", "body": "#### Added\r\n- add debug logging for BLASTing\r\n\r\n\r\n#### Changed\r\n- allow users to retry failed and successful NuVs BLASTs\r\n- show NCBI BLAST errors to users when they occurs\r\n- use 'No name' as NuVs BLAST result name when actual name missing from NCBI response (#1469)\r\n\r\n#### Fixed\r\n- fix debug messages not showing in `--dev` mode\r\n- fix unhandled `KeyError` when trying to retrieve record for importing sample via API (#1468)\r\n- fix unhandled `BadZipFile` error when fetching BLAST result from NCBI (#1456)", "prerelease": false, "published_at": "2019-09-25T22:16:47Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44949608, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.4", "body": "#### Fixed\r\n- fix error during database setup (#1403)\r\n- fix server error when updating account (#1453)\r\n", "prerelease": false, "published_at": "2019-09-19T17:53:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44950648, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.3", "body": "#### Fixed\r\n- fix HMM release installation bugs (#1454, #1455)", "prerelease": false, "published_at": "2019-09-06T17:19:17Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44946313, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.2", "body": "#### Fixed\r\n- fix error when fetching list of jobs from server", "prerelease": false, "published_at": "2019-09-03T18:55:43Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44945903, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.1", "body": "#### Changed\r\n- update appearance of alerts\r\n- update appearance of isolate detail view\r\n\r\n#### Fixed\r\n- fix error when running analysis on legacy samples (#1447)\r\n- fix client security issues\r\n", "prerelease": false, "published_at": "2019-09-03T18:31:05Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44952016, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0", "body": "#### Changed\r\n- improve appearance of _404 Not found_ pages\r\n- use retrieved complete Genbank accessions when autofilling sequence forms (#1397)\r\n\r\n#### Fixed\r\n- fix error when autofetching HMM data from internet (#1398)\r\n- fix errors when downloading legacy sample files (#1432)", "prerelease": false, "published_at": "2019-08-27T21:29:39Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44949379, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0-beta.2", "body": "#### Changed\r\n- simplify file storage of oversized analysis records\r\n\r\n#### Fixed\r\n- fix incorrect pathoscope sorting when result viewer first renders\r\n- fixed spelling error in API creation dialog", "prerelease": true, "published_at": "2019-08-23T01:55:38Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44947059, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0-beta.1", "body": "#### Changed\r\n- first user is now configured outside intial setup (#1314)\r\n- minor improvement to login and forced password change views\r\n\r\n#### Fixed\r\n- fix broken pathoscope result sorting (#1415)\r\n- fix issue in pathoscope median depth calculation (this may affect results in some cases)", "prerelease": true, "published_at": "2019-08-19T16:58:28Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44946804, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0", "body": "#### Fixed\r\n- fix BLAST issues in NuVs interface\r\n- fix erroneously shown no OTU alert in indexes view\r\n- fix OTU coverage chart bug (#1410)", "prerelease": false, "published_at": "2019-07-23T21:10:17Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45046394, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.3", "body": "#### Changed\r\n- make **Raw Data** and **Cached Trims** panels consistently styled in sample detail view\r\n\r\n#### Fixed\r\n- fix raw QC results being displayed as cache results\r\n- fix crash when switching between isolates in pathoscope viewer", "prerelease": true, "published_at": "2019-07-18T23:40:11Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45043613, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.2", "body": "#### Added\r\n- add detailed logging for database connection failures during setup\r\n- write all log lines to `virtool.log`; previously only some lines were written\r\n\r\n#### Changes\r\n- overhaul NuVs result viewer\r\n\r\n#### Fixed\r\n- fix broken searching in NuVs viewer\r\n- fix buggy file manager list sorting\r\n", "prerelease": true, "published_at": "2019-07-17T16:07:37Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45043027, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.1", "body": "#### Added\r\n- add API endpoint for getting cache detail (including QC)\r\n- add views for cached trim quality diagrams (#1363)\r\n- link to cache quality view from analysis detail view\r\n\r\n#### Changed\r\n- minor improvements to NuVs result viewer\r\n- remove animations from pathoscope result viewer\r\n\r\n#### Fixed\r\n- fix alignment of job step icons and spinners (#1387)\r\n- fix excessive filtering of NuVs results\r\n- fix visual glitch where tab links rendered over top of main navigation bar", "prerelease": true, "published_at": "2019-07-03T18:30:04Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45041667, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.2", "body": "#### Changed\r\n- capitalize _organism_ field in manage reference view\r\n- remove all mention of barcodes from user interface; this will not be supported for now\r\n\r\n#### Fixed\r\n- fix incomplete job cleanup in analysis jobs\r\n- fix error in NuVs during _Reunite Pairs_ step (#1386)", "prerelease": false, "published_at": "2019-06-05T15:56:21Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45037172, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.1", "body": "#### Changed\r\n- improve upload dialog\r\n\r\n#### Fixed\r\n- fix bugs in reference member management interface\r\n- fix bugs in sample file replacement upload interface (#1377)", "prerelease": false, "published_at": "2019-06-04T19:33:15Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45037909, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.0", "body": "#### Added\r\n- accept gzip-compressed subtraction FASTA files (#1373)\r\n- show alert about administrator API keys in API key creation dialog\r\n- show alert on sample quality page for samples with no raw data (#1364)\r\n- subtraction FASTA files are now retained; download will be introduced later (#1382)\r\n\r\n#### Changed\r\n- hide administration link in navigation drop down if user is not administrator\r\n- improve rendering of task arguments in job detail view\r\n- improve user interface tabs\r\n- make identicons circular\r\n- remove unused client styling code\r\n- simplify account page\r\n- update appearance of checkbox setting components\r\n\r\n#### Fixed\r\n- don't limit permissions for new administrator API keys\r\n- fix client crash when navigating to HMM settings\r\n- fix errors due to incorrect parsing of config files or values (#1348)\r\n- gracefully handle errors when inotify watches cannot be configured on start (#1349)", "prerelease": false, "published_at": "2019-05-29T20:22:25Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45034813, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0", "body": "#### Changed\r\n- automatically strip white space from API inputs where appropriate\r\n- remove unfinished (zombie) jobs on application start\r\n- remove unfinished analysis on application start", "prerelease": false, "published_at": "2019-05-23T15:50:53Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45040103, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.3", "body": "#### Fixed\r\n- fix non-functional realtime updates\r\n- fix various Python code issues\r\n- restore missing download_and_parse_release() function\r\n\r\n#### Removed\r\n- drop mean depth option for Pathoscope view", "prerelease": true, "published_at": "2019-05-09T21:31:34Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45033591, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.2", "body": "#### Added\r\n- add missing `Location` headers for some API responses\r\n\r\n\r\n#### Fixed\r\n- fix errors when handling certain real time updates in client (#1350, #1351, #1352)\r\n- fix crash when loading Pathoscope result\r\n- update some Javascript packages with security issues", "prerelease": true, "published_at": "2019-05-08T16:08:18Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45036340, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.1", "body": "#### Added\r\n- allow explicit selection of paired read orientation during sample creation\r\n- allow export of Pathoscope reports in `csv` or `xlsx` formats (#1300)\r\n- allow replacement of trimmed sample data with original raw files (#1322, #1066)\r\n- new tab for downloading and viewing sample files and trim caches\r\n- show consensus coverage charts for OTUs (merged from isolates)\r\n- speed up sample data compression using `pigz` when available\r\n\r\n#### Changed\r\n- improve appearance of job detail view\r\n- improve appearance of pathoscope hits\r\n- make job stage names more consistent and meaningful\r\n- move read trimming step to analysis from sample creation\r\n- retain raw data for samples (#1066)\r\n- overhaul presentation of overall Pathoscope mapping result\r\n\r\n#### Fixed\r\n- fix rendered units for data sizes (_MiB_ -> _MB_)\r\n", "prerelease": true, "published_at": "2019-04-24T23:28:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45032390, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-alpha.1", "body": "#### Added\r\n- implement user interface for searching samples by analysis state\r\n- search for samples by (documentation pending) analysis state on API\r\n\r\n#### Fixed\r\n- fix variation in sample algorithm label width between color variants", "prerelease": true, "published_at": "2019-02-28T22:21:33Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-alpha.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44837786, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-alpha.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.1", "body": "#### Changed\r\n- improved testing\r\n- miscellaneous code maintenance\r\n\r\n#### Fixed\r\n- fix error when headers missing in GitHub API response (#1272)\r\n- fix `InvalidStateError` on server when fetching reference detail (#1311)\r\n- fix remote reference version not changing when update completes (#1278)\r\n- fix index build required alert shown in OTUs list even when no build is required (#1280)\r\n", "prerelease": false, "published_at": "2019-02-25T23:45:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44821859, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.0", "body": "#### Fixed\r\n- fix migration of HTTP server configuration from `settings.json`", "prerelease": false, "published_at": "2019-02-20T19:14:32Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44808066, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.0-beta.1", "body": "#### Added\r\n- automatically migrate old `settings.json` configuration to new model\r\n- expose more application configuration options\r\n- segment value field for sequences in OTU detail view (#1291)\r\n- sequence length indicator in OTU detail view (#1291)\r\n- take all config values from `config.json`, environmental variable, and command line arguments\r\n- validate instance and job resource limits on server start (#1285)\r\n\r\n#### Changed\r\n- automatically strip OTU names when created or edited (#1291)\r\n- overhaul initial setup interface\r\n- use `config.json` as config file and only load on server start\r\n- use MongoDB connection strings instead of individual parameters\r\n- use single proxy address as connection parameter instead of individual parts\r\n- store some settings in database instead of file\r\n\r\n#### Removed\r\n- remove settings user interface components for settings derived from `config.json`\r\n\r\n#### Fixed\r\n- fix broken add analysis button (#1285)\r\n- fix buggy active state on OTU tab in OTU detail view\r\n- fix real time update bugs in sample analysis lists\r\n- fix crash when adding group and (#1287)\r\n- fix incorrect _In Progress_ label for some analyses (#1292)\r\n- fix members missing from detail view (#1277)\r\n- fix missing schema and sequence segment assignments in imported and remoted references\r\n- fix monospace styling on sequence `textarea` field\r\n- fix problem adding unnamed isolates (#1291)\r\n- fix source type checking\r\n- fix `z-index` visual bug in reference settings view (#1273)\r\n\r\n", "prerelease": true, "published_at": "2019-02-20T17:09:52Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44809350, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.3", "body": "#### Fixed\r\n- fix broken file upload and watch features", "prerelease": false, "published_at": "2019-02-05T18:54:00Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44813432, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.2", "body": "#### Fixed\r\n- fix unhandled exception on start related to watch path", "prerelease": false, "published_at": "2019-01-11T16:55:14Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44805806, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.1", "body": "#### Changed\r\n- don't show unready or in-use files in file lists\r\n- limit visible reference cards to those the user can access\r\n- redirect to login page if session expires (#1258)\r\n- redirect to OTU list if the complete history for an OTU is removed (#1223)\r\n\r\n#### Fixed\r\n- fix early expiration of _remembered_ sessions (#1263)\r\n- fix error when viewing HMM list (#1260)\r\n- fix freeze in when all history for OTU is removed (#1223)\r\n- fix unhandled error when analysis directory cannot be found during cleanup\r\n- fix unhandled error when server version can't be determined (#1259)\r\n- fix unhandled error on server start when `watch` directory cannot be found (#901)\r\n\r\n", "prerelease": false, "published_at": "2019-01-11T02:08:12Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44805252, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.0", "body": "#### Added\r\n- allow reset password on login capability and forcing (#1190)\r\n- add a remember me checkbox for login (#1190)\r\n- automatically remove of orphaned analysis files generated as a result of an old bug (#765, #1187)\r\n- timeout sessions (#1190)\r\n\r\n#### Changed\r\n- format numbers in Pathoscope and NuVs information tables (#1220)\r\n- general security improvements\r\n- improve layout of reference cards\r\n- move reference removal button to reference settings\r\n- simplify look of analysis pop-up for single-sample analyses (#1219)\r\n\r\n#### Removed\r\n- remove legacy database update code (#1022)\r\n\r\n#### Fixed\r\n- fix empty or malformed NuVs data download files (#1215)\r\n- fix user management view bugs\r\n- fix issues with scrolling lists and search bars arbitrarily containing numbers (#1243)\r\n- fix instances of HMM install status being detected incorrectly\r\n- fix job searching problems (#1216)\r\n- fix problems in views displaying or editing reference data type and organism information\r\n", "prerelease": false, "published_at": "2019-01-09T22:12:43Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44804111, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.1.0", "body": "#### Changed\r\n- make versions prior to `v3.0.0` update to `v3.0.0` before updating further\r\n\r\n#### Fixed\r\n- fix bug where owner of sample is prevented from analyzing it (#1234)\r\n- use correct noun (not _OTU_) for sample removal dialog title (#1222)", "prerelease": false, "published_at": "2018-12-14T21:16:24Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.1.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44815711, "download_url": "https://github.com/virtool/virtool/releases/download/v3.1.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.0.0", "body": "#### Changed\r\n- allow export of built reference content only\r\n- allow export of referencees using the original remote OTU ids\r\n\r\n#### Fixed\r\n- fix a lot of miscellanous user interface bugs\r\n- fix broken OTU filter button (#1212)\r\n- fix bugs in job clear dropdown (#1211)\r\n- fix remote reference not getting data type and organism from source (#1224)\r\n- fix problem where user member groups are not options in primary group dropdown (#1221)\r\n\r\n", "prerelease": false, "published_at": "2018-12-12T22:59:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.0.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44815975, "download_url": "https://github.com/virtool/virtool/releases/download/v3.0.0/virtool.tar.gz", "asset_error": false}]}
\ No newline at end of file
+{"ref_plant_viruses": [{"name": "v1.4.0", "body": "- add isolates for Strawberry vein banding virus\r\n- add isolates for Strawberry mottle virus\r\n- add isolates for Strawberry mild yellow edge virus\r\n- add isolates for Nectarine stem pitting-associated virus\r\n- add isolate for Cherry green ring mottle virus\r\n- add isolates for Little cherry virus 2\r\n- add isolates for Little cherry virus 1\r\n- add isolates for Asian prunus virus 3\r\n- add isolates for Asian prunus virus 2\r\n- add isolates for Asian prunus virus 1", "prerelease": false, "published_at": "2019-06-04T18:20:58Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.4.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 4008271, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.4.0/reference.json.gz", "asset_error": false}, {"name": "v1.3.1", "body": "- add missing schema fields to all OTUs\r\n- improve testing\r\n- reduce reference size by not indenting data\r\n", "prerelease": false, "published_at": "2019-02-18T21:07:02Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.3.1", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3907351, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.3.1/reference.json.gz", "asset_error": false}, {"name": "v1.3.0", "body": "- add Actinidia chlorotic ringspot associated virus\r\n- add Actinidia virus 1\r\n- add Agave tequilana leaf virus\r\n- add Alfalfa leaf curl virus\r\n- add Alfalfa virus S\r\n- add Alstroemeria yellow spot virus\r\n- add Apple necrotic mosaic virus\r\n- add Arracacha virus 1\r\n- add Atractylodes mottle virus\r\n- add Babaco mosaic virus\r\n- add Beet ringspot virus\r\n- add Bellflower veinal mottle virus\r\n- add Bermuda grass latent virus\r\n- add Blackberry virus A\r\n- add Blackcurrant-associated closterovirus 1\r\n- add Bottle gourd mottle virus\r\n- add Broad-leafed dock virus A\r\n- add Calla lily chlorotic spot virus\r\n- add Camellia chlorotic dwarf-associated virus\r\n- add Cardamom mosaic virus\r\n- add Cassava virus X\r\n- add Cherry associated luteovirus\r\n- add Cherry virus trakiya\r\n- add Chrysanthemum virus R\r\n- add Clerodendrum chlorotic spot virus\r\n- add Cnidium vein yellowing virus 1\r\n- add Cnidium vein yellowing virus 2\r\n- add Colombian potato soil-borne virus\r\n- add Corn salad necrosis virus\r\n- add Cowpea polerovirus 1\r\n- add Cowpea polerovirus 2\r\n- add Curcurbit vein banding virus\r\n- add Currant virus A\r\n- add Cymbidium chlorotic mosaic virus\r\n- add Emilia yellow vein virus-[fz1]\r\n- add Ethiopia maize-associated virus\r\n- add Euphorbia caput-medusae latent virus\r\n- add Gomphocarpus mosaic virus\r\n- add Grapevine associated Tymo-like virus\r\n- add Grapevine enamovirus-1\r\n- add Grapevine leafroll-associated virus 13\r\n- add Grapevine virus J\r\n- add Grapevine virus I\r\n- add Helenium virus S\r\n- add Hibiscus-infecting cilevirus\r\n- add Hop yellow virus\r\n- add Hoya chlorotic spot virus\r\n- add Ixeridium yellow mottle virus 2\r\n- add Jasmine mosaic-associated virus 2\r\n- add Jasmine mosaic-associated virus 1\r\n- add Jasmine virus C\r\n- add Jasmine virus H\r\n- add Jasmine virus T\r\n- add Ligustrum virus A\r\n- add Lychnis mottle virus\r\n- add Melon chlorotic spot virus\r\n- add Melon severe mosaic tospovirus\r\n- add Mulberry mosaic leaf roll-associated virus\r\n- add Mume virus A\r\n- add Naranjilla mild mosaic virus\r\n- add Narcissus virus 1\r\n- add Olive latent ringspot virus\r\n- add Papaya cytorhabdovirus\r\n- add Peach associated luteovirus\r\n- add Peach chlorotic leaf spot virus\r\n- add Peach leaf pitting-associated virus\r\n- add Peanut virus C\r\n- add Pecan mosaic-associated virus\r\n- add Pepper chlorotic spot virus\r\n- add Pleione flower breaking virus\r\n- add Potato necrosis virus\r\n- add Potato virus U\r\n- add Privet leaf blotch-associated virus\r\n- add Red clover associated virus 1\r\n- add Redbud yellow ringspot-associated virus\r\n- add Ribes americanum virus A\r\n- add Rice stripe mosaic virus\r\n- add Salvia divinorum RNA virus 1\r\n- add Sambucus virus S\r\n- add Sugarcane chlorotic streak virus\r\n- add Tea plant necrotic ring blotch virus\r\n- add Temperate fruit decay-associated virus\r\n- add Tetterwort vein chlorosis virus\r\n- add Tomato apical leaf curl virus\r\n- add Tomato mottle leaf curl virus\r\n- add Turtle grass virus X\r\n- add Vanilla latent virus\r\n- add White clover mottle virus\r\n- add Wild melon vein banding virus\r\n- add Wild onion symptomless virus\r\n- add Yacon virus A\r\n- add Yam chlorotic necrotic mosaic virus\r\n- add Blackcurrant leafroll-associated virus 1", "prerelease": false, "published_at": "2019-02-01T21:17:34Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.3.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3933199, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.3.0/reference.json.gz", "asset_error": false}, {"name": "v1.2.0", "body": "- add Alfalfa virus F\r\n- add Apple-associated luteovirus\r\n- add Arracacha virus V\r\n- add Arracacha virus Y\r\n- add Barley virus G\r\n- add Black currant leaf chlorosis-associated virus\r\n- add Blackberry virus F\r\n- add Blueberry latent sperical virus\r\n- add Caucasus prunus virus\r\n- add Cherry virus B\r\n- add Cherry virus F\r\n- add Citrus mosaic sadwavirus\r\n- add Daphne virus Y\r\n- add Elderberry carlavirus A\r\n- add Elderberry carlavirus B\r\n- add Elderberry carlavirus D\r\n- add Elderberry carlavirus E\r\n- add Grapevine badnavirus 1\r\n- add Grapevine fanleaf virus satellite RNA\r\n- add Grapevine roditis leaf discoloration-associated virus\r\n- add Ixeridium yellow mottle virus 1\r\n- add Panicum distortion mosaic virus\r\n- add Passion fruit chlorotic mottle virus\r\n- add Peach virus D\r\n- add Pepper enamovirus\r\n- add Pepper virus A\r\n- add Petunia chlorotic mottle virus\r\n- add Platycodon mild mottle virus\r\n- add Salvia hispanica RNA virus 1\r\n- add Soybean latent spherical virus\r\n- add Squash chlorotic leaf spot virus\r\n- add Tomato mild mottle virus\r\n- add Tomato necrotic streak virus\r\n- add Vanilla virus X\r\n- add Watermelon bud necrosis virus\r\n- add Watermelon crinkle leaf associated virus 1\r\n- add Watermelon virus A\r\n- add Wild Vitis virus 1\r\n- remove trailing spaces from some OTU names", "prerelease": false, "published_at": "2019-01-30T19:37:05Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.2.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3626596, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.2.0/reference.json.gz", "asset_error": false}, {"name": "v1.1.0", "body": "- Add Aeonium ringspot virus\r\n- Add Alfalfa enamovirus 1\r\n- Add Arachis pintoi virus\r\n- Add Areca palm necrotic spindle-spot virus\r\n- Add Cacao mild mosaic virus\r\n- Add Apple hammerhead viroid-like circular RNA\r\n- Add Cacao yellow vein-banding virus\r\n- Add Citrus chlorotic spot virus\r\n- Add Citrus concave gum-associated virus\r\n- Add Coffee ringspot virus\r\n- Add Dioscorea nummularia-associated virus\r\n- Add Elderberry carlavirus\r\n- Add Grapevine fabavirus\r\n- Add Grapevine virus G\r\n- Add Grapevine virus K\r\n- Add Hobart betaflexivirus 1\r\n- Add Maize striate mosaic virus\r\n- Add Opium poppy mosaic virus\r\n- Add Palo verde broom virus\r\n- Add Paris mosaic necrosis virus\r\n- Add Passiflora edulis symptomless virus\r\n- Add Rice virus A\r\n- Add Senna mosaic virus\r\n- Add Tea plant line pattern virus\r\n- Add Watermelon crinkle leaf-associated virus 2\r\n- Add Tobacco mosqueado virus", "prerelease": false, "published_at": "2018-12-14T21:12:43Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.1.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3530937, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.1.0/reference.json.gz", "asset_error": false}, {"name": "v1.0.2", "body": "- add 1 isolate for Tobacco mosaic virus", "prerelease": false, "published_at": "2018-11-29T22:57:49Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.2", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3448888, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.2/reference.json.gz", "asset_error": false}, {"name": "v1.0.1", "body": "#### Changed\r\n- Added Apple rubbery wood virus 1\r\n- Added Apple rubbery wood virus 2\r\n- Added Grapevine virus H\r\n- Added 23 isolates for Grapevine virus T\r\n- Added 4 isolates for Grapevine leafroll-associated virus 1\r\n- Added 5 isolates for Grapevine leafroll-associated virus 2\r\n- Added 13 isolates for Grapevine leafroll-associated virus 3\r\n- Added 12 isolates for Grapevine pinot gris virus\r\n- Added 1 isolate for Grapevine syrah virus\r\n- Added 1 isolate for Raspberry bushy dwarf virus\r\n- Added more Tomato ringspot virus isolates\r\n- Removed 1 Apricot latent virus isolate", "prerelease": false, "published_at": "2018-11-29T20:15:42Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.1", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3542077, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.1/reference.json.gz", "asset_error": false}, {"name": "v1.0.0", "body": "- added all Genbank isolates for ASPV\r\n- fixed isolate names from some poorly named isolates\r\n- removed viruses and isolates used by the developers that haven't yet been published to Genbank\r\n- separated Apple stem pitting (ASPV) and Apricot latent viruses (ApLV)\r\n", "prerelease": false, "published_at": "2018-11-26T23:50:46Z", "html_url": "https://github.com/virtool/ref-plant-viruses/releases/tag/v1.0.0", "filename": "reference.json.gz", "content_type": "application/gzip", "size": 3330865, "download_url": "https://github.com/virtool/ref-plant-viruses/releases/download/v1.0.0/reference.json.gz", "asset_error": false}], "virtool_hmm": [{"name": "v0.2.1", "body": "- remove some annotations that didn't have corresponding profiles", "prerelease": false, "published_at": "2017-11-10T19:12:43Z", "html_url": "https://github.com/virtool/virtool-hmm/releases/tag/v0.2.1", "filename": "vthmm.tar.gz", "content_type": "application/gzip", "size": 85904451, "download_url": "https://github.com/virtool/virtool-hmm/releases/download/v0.2.1/vthmm.tar.gz", "asset_error": false}, {"name": "v0.2.0", "body": "- the first release using TravisCI for building and testing\r\n- merge annotations and profiles into one archive", "prerelease": false, "published_at": "2017-11-10T00:27:20Z", "html_url": "https://github.com/virtool/virtool-hmm/releases/tag/v0.2.0", "filename": "vthmm.tar.gz", "content_type": "application/gzip", "size": 86059385, "download_url": "https://github.com/virtool/virtool-hmm/releases/download/v0.2.0/vthmm.tar.gz", "asset_error": false}], "virtool": [{"name": "v4.0.0-beta.3", "body": "#### Added\r\n- support browser caching of analysis retrieval (`GET`) requests\r\n\r\n#### Changed\r\n- miscellaneous minor aesthetic improvements\r\n- simplify unnecessarily complicated reference export mechanism\r\n\r\n#### Fixed\r\n- fix **Add Sequence** dialog not opening\r\n- fix bad subtraction link in Pathoscope mapping overview\r\n- fix missing settings errors when starting with `--no-setup`\r\n- fix unrounded median values (#1833)", "prerelease": true, "published_at": "2020-05-13T16:44:13Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69015400, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-beta.2", "body": "#### Fixed\r\n- fix exception about missing `sentry_sdk` module", "prerelease": true, "published_at": "2020-04-25T19:14:46Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69015717, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-beta.1", "body": "#### Added\r\n- allow subtraction renaming\r\n- allow deletion of any subtraction, not just unused ones\r\n- automatically reconnect when server connection is lost (#1787, #1750)\r\n- make default subtractions for samples optional\r\n\r\n#### Changed\r\n- format JSON different depending on the request's `Accept` header\r\n- improve appearance of AODP joining chart y-axis (#1801)\r\n- improve appearance of OTU editor\r\n- improve appearance of user permission list\r\n- improve and harmonize appearance of analysis sorting buttons (#1779)\r\n- the term _Workflow_ will now replace _Algorithm_\r\n\r\n#### Fixed\r\n- fix appearance of pathoscope mapping overview\r\n- fix appearance of sequence close button in OTU editor (#1807)\r\n- fix broken coloring of history information icons\r\n- fix incorrect values in root (`GET /api`) response\r\n- fix revert icon being shown for history items that cannot be reverted (built changes)\r\n- fix gap in reference creation dialog (#1800)\r\n- fix Pathoscope analysis sort order for coverage and depth\r\n- improve speed of fetching Pathoscope results using caching (#1295)\r\n- improve and fix display of official reference installation message", "prerelease": true, "published_at": "2020-04-24T22:49:27Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68960514, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.7", "body": "#### Changed\r\n- improve Pathoscope result fetch times by caching coverage charts\r\n- make graph resizing consistent when browser size is changed\r\n- update button styling\r\n- update job progress bar coloring\r\n- update upload bar styling\r\n\r\n#### Fixed\r\n- fix issues when trying to delete multiple analyses or files\r\n- fix sessions expiring too early\r\n- remove extra OTU detail view header", "prerelease": true, "published_at": "2020-04-09T15:49:05Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.7", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68816145, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.7/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.6", "body": "#### Added\r\n- add descriptions for all AODP job steps\r\n\r\n#### Changed\r\n- filter AODP results by maximum OTU identity instead of minimum\r\n\r\n#### Fixed\r\n- fix clipping on sequence x-axis labels in NuVs viewer\r\n- fix problem with ORF graphics in NuVs viewer not resizing when window size changes\r\n- fix tiny tiny font size for login dialog error (#1786)\r\n", "prerelease": true, "published_at": "2020-04-06T21:20:57Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68824514, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.8", "body": "#### Added\r\n- report MongoDB version in API responses\r\n- add support and upgrade information to **Home** view\r\n\r\n#### Fixed\r\n- fix exception when creating samples with FASTQ files containing a lot of 3' Ns\r\n- resolve client security issue in dependency", "prerelease": false, "published_at": "2020-04-03T20:31:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.8", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69145188, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.8/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.5", "body": "#### Changed\r\n- show _no matches_ message when no AODP hits meet identity filter\r\n\r\n#### Fixed\r\n- fix crash when no AODP hits meet identity filter\r\n- prevent misleading fatal `git` error from writing to console during startup\r\n", "prerelease": true, "published_at": "2020-04-01T23:31:27Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 68830921, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.7", "body": "#### Changed\r\n- include software libraries in distributable that are missing on some platforms\r\n- provide failing quality line when raising error during FastQC parsing", "prerelease": false, "published_at": "2020-04-01T15:27:13Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.7", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69146122, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.7/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.4", "body": "#### Changed\r\n- update Pathoscope viewer\r\n\r\n#### Fixed\r\n- fix crash when displaying AODP result\r\n- fix index list item appearance (#1770)\r\n- fix navigation bar appearance (#1768)\r\n", "prerelease": true, "published_at": "2020-03-31T16:33:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69054748, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.4/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.3", "body": "#### Added\r\n- add AODP result viewer (#1743)\r\n- add AODP analysis option in creation dialog (#1748)\r\n- implement AODP as a analysis algorithm\r\n\r\n#### Changed\r\n- update application appearance (#1685, #1703, #1711, #1712, #1714, #1717, #1729, #1736, #1743, #1749)\r\n- make view headers consistent\r\n- overhaul input interfaces\r\n- return `data_type` from API when fetching ready indexes\r\n- show 'None Found' when no targets assigned for barcode reference (#1720)\r\n\r\n#### Fixed\r\n- fix crash when client loads sample settings\r\n- fix error in remove schema segment dialog (#1724)\r\n- fix error when editing OTU sequence\r\n- fix error when OTU schema tab is viewed (#1709)\r\n- fix issues importing and exporting references (#1741)\r\n- fix issues in clone reference dialog (#1690)", "prerelease": true, "published_at": "2020-03-30T20:34:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 69049803, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.7-beta.1", "body": "#### Fixed\r\n- fix incorrect subtraction counts for Pathoscope analyses (#1747)\r\n- fix platform-specific issues due to `cx-Freeze` package\r\n- upgrade packages with security issues\r\n", "prerelease": true, "published_at": "2020-03-20T00:18:38Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.7-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 64542303, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.7-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.6", "body": "#### Fixed\r\n- fix `0` always being shown as subtracted read count in Pathoscope viewer (#1735)\r\n- fix crash in browser when navigating to reference index list\r\n- fix default subtraction always being used for new analysis (#1735)\r\n- fix default subtraction name always shown in pathoscope viewer (#1735)\r\n- fix default subtraction always returned when fetching analysis from API (#1735)", "prerelease": false, "published_at": "2020-02-28T20:15:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50935040, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.5", "body": "#### Fixed\r\n- fix occasional crash in client when loading sample settings\r\n- fix dialog for adding users to reference (#1686)\r\n- fix issues when removing reference user groups\r\n- fix misspelling of 'Administrator' in user dropdown\r\n- fix icon padding in user administration detail header (#1688) \r\n- fix horizontal alignment in reference items in analysis dialog (#1689)", "prerelease": false, "published_at": "2020-02-12T17:42:04Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50933532, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.5/virtool.tar.gz", "asset_error": false}, {"name": "v4.0.0-alpha.1", "body": "#### Added\r\n- add library type selection component in sample creation dialog (#1585)\r\n- add reference data type support to creation dialog (#1557)\r\n- add target editor component for barcode references (#1673)\r\n- check MongoDB server version on application start\r\n- support `library_type` input field for sample creation requests (replaces `srna` field`)\r\n- support `targets` input field for barcode reference edit requests for\r\n\r\n#### Changed\r\n- show **Library Type** in sample detail table (#1608)\r\n- show **Date Type** in reference detail table\r\n- support larger history records for large sequences or large remote reference OTUs\r\n- update **Build Index** job to support barcode analysis\r\n- update OTU editor to support barcode sequences (#1601, #1638)\r\n\r\n#### Fixed\r\n- fix uneven OTU editor sequence entry table column widths (#1665)\r\n- fix real-time updates that had incomplete information\r\n", "prerelease": true, "published_at": "2020-02-06T21:20:58Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v4.0.0-alpha.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50945364, "download_url": "https://github.com/virtool/virtool/releases/download/v4.0.0-alpha.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.4", "body": "#### Fixed\r\n- fix error when exporting pathoscope results\r\n- fix non-functional browser back (#1189, #1575)", "prerelease": false, "published_at": "2020-02-04T23:57:39Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50935287, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.3", "body": "#### Changed\r\n- allow browser uploads when file manager is disabled on server (supports MacOS hosts)\r\n- don't run file manager on start when operating system is incompatible (supports MacOS hosts)\r\n\r\n#### Fixed\r\n- fix client crashes in job detail view (#1651)\r\n- prevent flash of previously loaded analysis list or analysis detail (#1574)", "prerelease": false, "published_at": "2020-01-21T22:37:24Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50941782, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.2", "body": "#### Fixed\r\n- fix crashes in some views that include times\r\n- fix non-function job cleanup on application start", "prerelease": false, "published_at": "2020-01-14T18:42:26Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50930086, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.1", "body": "#### Fixed\r\n- fix scrolling issue in large lists", "prerelease": false, "published_at": "2020-01-13T21:22:32Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50945573, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.9.0", "body": "#### Added\r\n- add keyboard-based navigation to NuVs result viewer\r\n\r\n#### Changed\r\n- ensure application data folder is intact on every server start\r\n- make clone and remote reference panels consistent in appearance with sibling panels (#1639)\r\n\r\n#### Fixed\r\n- fix appearance of API documentation link in administrative settings (#1627)\r\n- fix client crash when there is no significant NuVs hit\r\n- fix contradictory Sentry setup messages in log output\r\n- fix incorrect modified OTU count being calculated for references\r\n- fix refresh issue during setup that made it unclear the server was being restarted (#1570)\r\n- fix server crash when caches data directory cannot be found\r\n- fix unhandled exception when writing settings to database during setup (#1530)", "prerelease": false, "published_at": "2020-01-13T19:34:50Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.9.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50940980, "download_url": "https://github.com/virtool/virtool/releases/download/v3.9.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.6", "body": "#### Fixed\r\n- resolve minor security issue in client", "prerelease": false, "published_at": "2020-01-06T19:18:37Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.6", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 51002502, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.6/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.5", "body": "#### Added\r\n- remove incomplete samples on application start\r\n\r\n#### Changed\r\n- improve job list item appearance\r\n- improve administrative user detail view\r\n\r\n#### Fixed\r\n- fix useless job remove and cancel icons (#1603)\r\n- fix visual bug in group list in administrative user interface (#1578)s", "prerelease": false, "published_at": "2019-12-19T20:47:28Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 51000786, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.4", "body": "#### Added\r\n- show user alert when trim cache files cannot be found\r\n\r\n#### Changed\r\n- create new trim cache during analysis when cache file cannot be found", "prerelease": false, "published_at": "2019-12-16T19:58:29Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50994357, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.3", "body": "#### Added\r\n- add API setting in web interface (#1558)\r\n\r\n#### Changed\r\n- fix checkbox alignment in source type form\r\n- improve application stability and testing\r\n- show Gitter chat link instead of Discord in navigation bar\r\n- update isolate editor appearance\r\n\r\n#### Removed\r\n- remove data table in OTU general info view\r\n\r\n#### Fixed\r\n- fix faulty API key authentication\r\n- fix faulty reference import functionality\r\n- fix security issue in `serialize-javascript` dependency\r\n- throttle sample creation requests to prevent duplicate submissions (#1547)\r\n- throttle remote reference creation requests to prevent duplicate submissions (#1569)\r\n", "prerelease": false, "published_at": "2019-12-11T00:08:10Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50994614, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.2", "body": "#### Changed\r\n- appearance improvements for some user interface components\r\n- prevent potential data loss when editing OTUs\r\n\r\n#### Fixed\r\n- fix incomplete parsing of Genbank definitions when fetching from NCBI (#1548)", "prerelease": false, "published_at": "2019-11-15T17:52:48Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 50995600, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.1", "body": "#### Changed\r\n- prevent first user setup dialog from being too wide on large displays\r\n\r\n#### Fixed\r\n- fix BLAST spinner (#1520)\r\n- fix link justification in reference user and groups settings\r\n- fix various errors when viewing reference details (#1527, #1511, #1516, #1500)", "prerelease": false, "published_at": "2019-11-01T21:41:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44954699, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0", "body": "#### Added\r\n- allow choice of different subtraction for each analysis (#1231)\r\n- samples have **Default Subtraction** setting instead of hard-linked **Subtraction Host** (#1231)\r\n- show warning when sample files are unusually small (#1483)\r\n\r\n#### Changed\r\n- slight changes to user group administration dialog\r\n- update appearance of alerts\r\n- update appearance of isolate editor \r\n- update appearance of source type settings\r\n- update appearance of HMM, history, and files list items (#1473, #1492, #1481, #1461, #1472)\r\n- overhaul reference list items\r\n- minor changes and improvements to many user interface elements\r\n\r\n#### Fixed\r\n- fix text alignment in pathoscope mapping overview (#1474)\r\n- fix always depressed buttons\r\n- fix non-removal of FASTQ files after they are used to create a sample (#1484)", "prerelease": false, "published_at": "2019-10-21T18:22:06Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44958715, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.3", "body": "#### Changed\r\n- slight changes to user group administration dialog\r\n\r\n#### Fixed\r\n- fix subtraction selection issues in sample creation dialog", "prerelease": true, "published_at": "2019-10-17T21:02:23Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44953132, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.2", "body": "#### Fixed\r\n- fix unwarranted no host error in create sample modal (#1504)", "prerelease": true, "published_at": "2019-10-15T16:43:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44951038, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.8.0-beta.1", "body": "#### Added\r\n- allow choice of different subtraction for each analysis (#1231)\r\n- samples have **Default Subtraction** setting instead of hard-linked **Subtraction Host** (#1231)\r\n- show warning when sample files are unusually small (#1483)\r\n\r\n#### Changed\r\n- update appearance of alerts\r\n- update appearance of isolate editor \r\n- update appearance of source type settings\r\n- update appearance of HMM, history, and files list items (#1473, #1492, #1481, #1461, #1472)\r\n- overhaul reference list items\r\n- minor changes and improvements to many user interface elements\r\n\r\n#### Fixed\r\n- fix text alignment in pathoscope mapping overview (#1474)\r\n- fix always depressed buttons\r\n- fix non-removal of FASTQ files after they are used to create a sample (#1484)\r\n", "prerelease": true, "published_at": "2019-10-09T17:51:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.8.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44956363, "download_url": "https://github.com/virtool/virtool/releases/download/v3.8.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.5", "body": "#### Added\r\n- add debug logging for BLASTing\r\n\r\n\r\n#### Changed\r\n- allow users to retry failed and successful NuVs BLASTs\r\n- show NCBI BLAST errors to users when they occurs\r\n- use 'No name' as NuVs BLAST result name when actual name missing from NCBI response (#1469)\r\n\r\n#### Fixed\r\n- fix debug messages not showing in `--dev` mode\r\n- fix unhandled `KeyError` when trying to retrieve record for importing sample via API (#1468)\r\n- fix unhandled `BadZipFile` error when fetching BLAST result from NCBI (#1456)", "prerelease": false, "published_at": "2019-09-25T22:16:47Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.5", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44949608, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.5/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.4", "body": "#### Fixed\r\n- fix error during database setup (#1403)\r\n- fix server error when updating account (#1453)\r\n", "prerelease": false, "published_at": "2019-09-19T17:53:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.4", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44950648, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.4/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.3", "body": "#### Fixed\r\n- fix HMM release installation bugs (#1454, #1455)", "prerelease": false, "published_at": "2019-09-06T17:19:17Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44946313, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.2", "body": "#### Fixed\r\n- fix error when fetching list of jobs from server", "prerelease": false, "published_at": "2019-09-03T18:55:43Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44945903, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.1", "body": "#### Changed\r\n- update appearance of alerts\r\n- update appearance of isolate detail view\r\n\r\n#### Fixed\r\n- fix error when running analysis on legacy samples (#1447)\r\n- fix client security issues\r\n", "prerelease": false, "published_at": "2019-09-03T18:31:05Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44952016, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0", "body": "#### Changed\r\n- improve appearance of _404 Not found_ pages\r\n- use retrieved complete Genbank accessions when autofilling sequence forms (#1397)\r\n\r\n#### Fixed\r\n- fix error when autofetching HMM data from internet (#1398)\r\n- fix errors when downloading legacy sample files (#1432)", "prerelease": false, "published_at": "2019-08-27T21:29:39Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44949379, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0-beta.2", "body": "#### Changed\r\n- simplify file storage of oversized analysis records\r\n\r\n#### Fixed\r\n- fix incorrect pathoscope sorting when result viewer first renders\r\n- fixed spelling error in API creation dialog", "prerelease": true, "published_at": "2019-08-23T01:55:38Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44947059, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.7.0-beta.1", "body": "#### Changed\r\n- first user is now configured outside intial setup (#1314)\r\n- minor improvement to login and forced password change views\r\n\r\n#### Fixed\r\n- fix broken pathoscope result sorting (#1415)\r\n- fix issue in pathoscope median depth calculation (this may affect results in some cases)", "prerelease": true, "published_at": "2019-08-19T16:58:28Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.7.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44946804, "download_url": "https://github.com/virtool/virtool/releases/download/v3.7.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0", "body": "#### Fixed\r\n- fix BLAST issues in NuVs interface\r\n- fix erroneously shown no OTU alert in indexes view\r\n- fix OTU coverage chart bug (#1410)", "prerelease": false, "published_at": "2019-07-23T21:10:17Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45046394, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.3", "body": "#### Changed\r\n- make **Raw Data** and **Cached Trims** panels consistently styled in sample detail view\r\n\r\n#### Fixed\r\n- fix raw QC results being displayed as cache results\r\n- fix crash when switching between isolates in pathoscope viewer", "prerelease": true, "published_at": "2019-07-18T23:40:11Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45043613, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.2", "body": "#### Added\r\n- add detailed logging for database connection failures during setup\r\n- write all log lines to `virtool.log`; previously only some lines were written\r\n\r\n#### Changes\r\n- overhaul NuVs result viewer\r\n\r\n#### Fixed\r\n- fix broken searching in NuVs viewer\r\n- fix buggy file manager list sorting\r\n", "prerelease": true, "published_at": "2019-07-17T16:07:37Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45043027, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.6.0-beta.1", "body": "#### Added\r\n- add API endpoint for getting cache detail (including QC)\r\n- add views for cached trim quality diagrams (#1363)\r\n- link to cache quality view from analysis detail view\r\n\r\n#### Changed\r\n- minor improvements to NuVs result viewer\r\n- remove animations from pathoscope result viewer\r\n\r\n#### Fixed\r\n- fix alignment of job step icons and spinners (#1387)\r\n- fix excessive filtering of NuVs results\r\n- fix visual glitch where tab links rendered over top of main navigation bar", "prerelease": true, "published_at": "2019-07-03T18:30:04Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.6.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45041667, "download_url": "https://github.com/virtool/virtool/releases/download/v3.6.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.2", "body": "#### Changed\r\n- capitalize _organism_ field in manage reference view\r\n- remove all mention of barcodes from user interface; this will not be supported for now\r\n\r\n#### Fixed\r\n- fix incomplete job cleanup in analysis jobs\r\n- fix error in NuVs during _Reunite Pairs_ step (#1386)", "prerelease": false, "published_at": "2019-06-05T15:56:21Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45037172, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.1", "body": "#### Changed\r\n- improve upload dialog\r\n\r\n#### Fixed\r\n- fix bugs in reference member management interface\r\n- fix bugs in sample file replacement upload interface (#1377)", "prerelease": false, "published_at": "2019-06-04T19:33:15Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45037909, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.5.0", "body": "#### Added\r\n- accept gzip-compressed subtraction FASTA files (#1373)\r\n- show alert about administrator API keys in API key creation dialog\r\n- show alert on sample quality page for samples with no raw data (#1364)\r\n- subtraction FASTA files are now retained; download will be introduced later (#1382)\r\n\r\n#### Changed\r\n- hide administration link in navigation drop down if user is not administrator\r\n- improve rendering of task arguments in job detail view\r\n- improve user interface tabs\r\n- make identicons circular\r\n- remove unused client styling code\r\n- simplify account page\r\n- update appearance of checkbox setting components\r\n\r\n#### Fixed\r\n- don't limit permissions for new administrator API keys\r\n- fix client crash when navigating to HMM settings\r\n- fix errors due to incorrect parsing of config files or values (#1348)\r\n- gracefully handle errors when inotify watches cannot be configured on start (#1349)", "prerelease": false, "published_at": "2019-05-29T20:22:25Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.5.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45034813, "download_url": "https://github.com/virtool/virtool/releases/download/v3.5.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0", "body": "#### Changed\r\n- automatically strip white space from API inputs where appropriate\r\n- remove unfinished (zombie) jobs on application start\r\n- remove unfinished analysis on application start", "prerelease": false, "published_at": "2019-05-23T15:50:53Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45040103, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.3", "body": "#### Fixed\r\n- fix non-functional realtime updates\r\n- fix various Python code issues\r\n- restore missing download_and_parse_release() function\r\n\r\n#### Removed\r\n- drop mean depth option for Pathoscope view", "prerelease": true, "published_at": "2019-05-09T21:31:34Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45033591, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.2", "body": "#### Added\r\n- add missing `Location` headers for some API responses\r\n\r\n\r\n#### Fixed\r\n- fix errors when handling certain real time updates in client (#1350, #1351, #1352)\r\n- fix crash when loading Pathoscope result\r\n- update some Javascript packages with security issues", "prerelease": true, "published_at": "2019-05-08T16:08:18Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45036340, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-beta.1", "body": "#### Added\r\n- allow explicit selection of paired read orientation during sample creation\r\n- allow export of Pathoscope reports in `csv` or `xlsx` formats (#1300)\r\n- allow replacement of trimmed sample data with original raw files (#1322, #1066)\r\n- new tab for downloading and viewing sample files and trim caches\r\n- show consensus coverage charts for OTUs (merged from isolates)\r\n- speed up sample data compression using `pigz` when available\r\n\r\n#### Changed\r\n- improve appearance of job detail view\r\n- improve appearance of pathoscope hits\r\n- make job stage names more consistent and meaningful\r\n- move read trimming step to analysis from sample creation\r\n- retain raw data for samples (#1066)\r\n- overhaul presentation of overall Pathoscope mapping result\r\n\r\n#### Fixed\r\n- fix rendered units for data sizes (_MiB_ -> _MB_)\r\n", "prerelease": true, "published_at": "2019-04-24T23:28:16Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 45032390, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.4.0-alpha.1", "body": "#### Added\r\n- implement user interface for searching samples by analysis state\r\n- search for samples by (documentation pending) analysis state on API\r\n\r\n#### Fixed\r\n- fix variation in sample algorithm label width between color variants", "prerelease": true, "published_at": "2019-02-28T22:21:33Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.4.0-alpha.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44837786, "download_url": "https://github.com/virtool/virtool/releases/download/v3.4.0-alpha.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.1", "body": "#### Changed\r\n- improved testing\r\n- miscellaneous code maintenance\r\n\r\n#### Fixed\r\n- fix error when headers missing in GitHub API response (#1272)\r\n- fix `InvalidStateError` on server when fetching reference detail (#1311)\r\n- fix remote reference version not changing when update completes (#1278)\r\n- fix index build required alert shown in OTUs list even when no build is required (#1280)\r\n", "prerelease": false, "published_at": "2019-02-25T23:45:36Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44821859, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.0", "body": "#### Fixed\r\n- fix migration of HTTP server configuration from `settings.json`", "prerelease": false, "published_at": "2019-02-20T19:14:32Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44808066, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.3.0-beta.1", "body": "#### Added\r\n- automatically migrate old `settings.json` configuration to new model\r\n- expose more application configuration options\r\n- segment value field for sequences in OTU detail view (#1291)\r\n- sequence length indicator in OTU detail view (#1291)\r\n- take all config values from `config.json`, environmental variable, and command line arguments\r\n- validate instance and job resource limits on server start (#1285)\r\n\r\n#### Changed\r\n- automatically strip OTU names when created or edited (#1291)\r\n- overhaul initial setup interface\r\n- use `config.json` as config file and only load on server start\r\n- use MongoDB connection strings instead of individual parameters\r\n- use single proxy address as connection parameter instead of individual parts\r\n- store some settings in database instead of file\r\n\r\n#### Removed\r\n- remove settings user interface components for settings derived from `config.json`\r\n\r\n#### Fixed\r\n- fix broken add analysis button (#1285)\r\n- fix buggy active state on OTU tab in OTU detail view\r\n- fix real time update bugs in sample analysis lists\r\n- fix crash when adding group and (#1287)\r\n- fix incorrect _In Progress_ label for some analyses (#1292)\r\n- fix members missing from detail view (#1277)\r\n- fix missing schema and sequence segment assignments in imported and remoted references\r\n- fix monospace styling on sequence `textarea` field\r\n- fix problem adding unnamed isolates (#1291)\r\n- fix source type checking\r\n- fix `z-index` visual bug in reference settings view (#1273)\r\n\r\n", "prerelease": true, "published_at": "2019-02-20T17:09:52Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.3.0-beta.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44809350, "download_url": "https://github.com/virtool/virtool/releases/download/v3.3.0-beta.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.3", "body": "#### Fixed\r\n- fix broken file upload and watch features", "prerelease": false, "published_at": "2019-02-05T18:54:00Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.3", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44813432, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.3/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.2", "body": "#### Fixed\r\n- fix unhandled exception on start related to watch path", "prerelease": false, "published_at": "2019-01-11T16:55:14Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.2", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44805806, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.2/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.1", "body": "#### Changed\r\n- don't show unready or in-use files in file lists\r\n- limit visible reference cards to those the user can access\r\n- redirect to login page if session expires (#1258)\r\n- redirect to OTU list if the complete history for an OTU is removed (#1223)\r\n\r\n#### Fixed\r\n- fix early expiration of _remembered_ sessions (#1263)\r\n- fix error when viewing HMM list (#1260)\r\n- fix freeze in when all history for OTU is removed (#1223)\r\n- fix unhandled error when analysis directory cannot be found during cleanup\r\n- fix unhandled error when server version can't be determined (#1259)\r\n- fix unhandled error on server start when `watch` directory cannot be found (#901)\r\n\r\n", "prerelease": false, "published_at": "2019-01-11T02:08:12Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.1", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44805252, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.1/virtool.tar.gz", "asset_error": false}, {"name": "v3.2.0", "body": "#### Added\r\n- allow reset password on login capability and forcing (#1190)\r\n- add a remember me checkbox for login (#1190)\r\n- automatically remove of orphaned analysis files generated as a result of an old bug (#765, #1187)\r\n- timeout sessions (#1190)\r\n\r\n#### Changed\r\n- format numbers in Pathoscope and NuVs information tables (#1220)\r\n- general security improvements\r\n- improve layout of reference cards\r\n- move reference removal button to reference settings\r\n- simplify look of analysis pop-up for single-sample analyses (#1219)\r\n\r\n#### Removed\r\n- remove legacy database update code (#1022)\r\n\r\n#### Fixed\r\n- fix empty or malformed NuVs data download files (#1215)\r\n- fix user management view bugs\r\n- fix issues with scrolling lists and search bars arbitrarily containing numbers (#1243)\r\n- fix instances of HMM install status being detected incorrectly\r\n- fix job searching problems (#1216)\r\n- fix problems in views displaying or editing reference data type and organism information\r\n", "prerelease": false, "published_at": "2019-01-09T22:12:43Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.2.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44804111, "download_url": "https://github.com/virtool/virtool/releases/download/v3.2.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.1.0", "body": "#### Changed\r\n- make versions prior to `v3.0.0` update to `v3.0.0` before updating further\r\n\r\n#### Fixed\r\n- fix bug where owner of sample is prevented from analyzing it (#1234)\r\n- use correct noun (not _OTU_) for sample removal dialog title (#1222)", "prerelease": false, "published_at": "2018-12-14T21:16:24Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.1.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44815711, "download_url": "https://github.com/virtool/virtool/releases/download/v3.1.0/virtool.tar.gz", "asset_error": false}, {"name": "v3.0.0", "body": "#### Changed\r\n- allow export of built reference content only\r\n- allow export of referencees using the original remote OTU ids\r\n\r\n#### Fixed\r\n- fix a lot of miscellanous user interface bugs\r\n- fix broken OTU filter button (#1212)\r\n- fix bugs in job clear dropdown (#1211)\r\n- fix remote reference not getting data type and organism from source (#1224)\r\n- fix problem where user member groups are not options in primary group dropdown (#1221)\r\n\r\n", "prerelease": false, "published_at": "2018-12-12T22:59:45Z", "html_url": "https://github.com/virtool/virtool/releases/tag/v3.0.0", "filename": "virtool.tar.gz", "content_type": "application/gzip", "size": 44815975, "download_url": "https://github.com/virtool/virtool/releases/download/v3.0.0/virtool.tar.gz", "asset_error": false}]}
\ No newline at end of file