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Python package and CLI for whole genome duplication analysis

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Copyright (C) 2018 Arthur Zwaenepoel

Whole genome duplication analysis

Python package and command line interface (CLI) for the analysis of whole genome duplications (WGDs). Tested with Python3.5 & Python3.6 on Linux Ubuntu. If you don't have python or pip installed a simple sudo apt-get install python3-pip will do on Ubuntu, Debian or Linux Mint.

To install: clone the repo, navigate to it and install it with pip

$ git clone https://github.com/arzwa/wgd.git
$ cd wgd
$ pip install .

For the command line interface, upon installation run

$ wgd

to get a list of the available commands. To get usage instructions for a command (e.g. ks) run

$ wgd ks --help

To use as a Python package as well as to find additional documentation for the CLI, please consult the docs at http://wgd.readthedocs.io/en/latest/

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Python package and CLI for whole genome duplication analysis

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  • Python 68.7%
  • Jupyter Notebook 31.3%