GenBank taxonomy processing tools

Teselagen Open Source modules

Micromamba executables mirrored from conda-forge as Github releases

A set of tools to annotate VCF files with expression and readcount data

Protein database (Fasta) generator from transcriptomic and genomic information

PyNextPolish

Citrus: this tool is designed to efficiently split barcodes from sequencing data. It streamlines the preprocessing of genomic data by separating barcodes, enhancing the accuracy of downstream analy…

Tool for demultiplexing Nanopore barcode sequence data

A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data

FastOMA is a scalable software package to infer orthology relationship.

OMA standalone repository

Plot coverage or percent of total sequence as a function of minimum read length

Repeat-aware polishing genomes assembled using HiFi long reads

Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures)…

A user friendly command line tool to access AliCloud OSS.

OSS Browser 提供类似windows资源管理器功能。用户可以很方便的浏览文件，上传下载文件，支持断点续传等。

CDS prediction in transcripts

simple and not slow ORF caller

Zstandard - Fast real-time compression algorithm

ML toolset for creating TED: The Encyclopedia of Domains

Protein structure comparison tools such as SSAP and SNAP

Mamba SSM architecture

Set of scripts to aid OpenGenomeBrowser administrators import data

A comprehensive, open-source genomics toolkit to perform and analyze relationships within genomics

Repository for StripedHyena, a state-of-the-art beyond Transformer architecture