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Commits on Jan 21, 2019

• update Changes after release 53.0 patches

  dozy

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• Merge pull request #404 from wtsi-npg/devel

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  dozy

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• Merge pull request #403 from mgcam/interop_files2interop_dir

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  dozy

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• Ensure the interop files go to a dedicated directory.

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  mgcam

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Commits on Jan 20, 2019

• Merge pull request #398 from mgcam/test_data_advance_fix

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Commits on Jan 15, 2019

• fix test: correct path by applying abs_path to getcwd result

  dozy

  committed
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Commits on Jan 14, 2019

• update Changes for release 53.0

  dozy

  committed
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Commits on Jan 11, 2019

• Merge pull request #396 from wtsi-npg/devel

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  dozy

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Commits on Jan 8, 2019

• Merge pull request #393 from mgcam/suppress_merge4rr

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  dozy

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Commits on Jan 7, 2019

• Merge pull request #399 from mgcam/db_test_fixtures_update

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  jmtcsngr

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• db fixtures update to satisfy unique and not null constraints on temporal_index in run_status_dict

  mgcam

  committed
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• Merge pull request #395 from mgcam/run_level2irods_function

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  dozy

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Commits on Dec 21, 2018

• add new tags to tag db fixture

  mgcam

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Commits on Dec 14, 2018

• Merge pull request #301 from rube14/rb11_rna_alignment_with_hisat2

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  dozy

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• Merge branch 'devel' into rb11_rna_alignment_with_hisat2

  dozy

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• Merge pull request #381 from mgcam/autoqc_from_stats

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  dozy

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Commits on Dec 13, 2018

• Merge pull request #394 from mgcam/accommodate_new_publisher

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  Keith James

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Commits on Dec 12, 2018

• a new function

  mgcam

  committed
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• new function module - run-level data archival

  mgcam

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• move common functionality to public methods so that it is accessible to child classes

  mgcam

  committed
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Commits on Dec 11, 2018

• update args for iRODS publisher

  mgcam

  committed
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• Merge pull request #387 from mgcam/irods_loader_switch

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  Keith James

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• more readable code, thanks to @keithj

  mgcam

  committed
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• for old style runfolders use iRODS loader from the "old" dated directory

  mgcam

  committed
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• Merge pull request #392 from mgcam/irods_root4nvs_runs

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  Keith James

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Commits on Dec 6, 2018

• suppress merge for RapidRun

  mgcam

  committed
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Commits on Dec 4, 2018

• set iRODS destination collection explicitly and differently for NovaSeq runs

  mgcam

  committed
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• Merge pull request #389 from mgcam/bcfstats_6gbmem

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  sb10

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Commits on Dec 3, 2018

• an extendable and PBP compliant way to specify memory requirements for autoqc jobs

  mgcam

  committed
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• Merge pull request #390 from mgcam/archival_daemon_bug_fix

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  jmtcsngr

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• archival daemon bug fix

  mgcam

  committed
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• following a discussion with @sb10 and @ces, change limit to 4GB

  mgcam

  committed
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• Merge pull request #388 from mgcam/wr_executor_retry_once

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  sb10

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• require 6GB memory for bcfstats

  mgcam

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Commits on Nov 30, 2018

• instruct wr to retry failed jobs once

  mgcam

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