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Issues list

Tag zero human split bug for multiple study pools bug
#745 opened Sep 13, 2022 by ces updated Sep 13, 2022
Remove stale code for npg_receipt4run_is_deletable
#725 opened Jun 13, 2022 by jmtcsngr updated Jun 13, 2022
Custom wr retry schedules for some jobs
#712 opened Feb 19, 2022 by mgcam updated Feb 19, 2022
ref caching bug bug
#711 opened Feb 18, 2022 by mgcam updated Feb 19, 2022
1
make general iRODS configuration per pipeline if needed enhancement
#700 opened Oct 12, 2021 by mgcam updated Oct 12, 2021
Jobs in the middle of the graph can become leaves (wr scheduler only) bug
#694 opened Sep 8, 2021 by mgcam updated Sep 8, 2021
1
Enable P4/samhaplotag processing in npg_seq_pipeline processing for haplotag library type
#692 opened Sep 2, 2021 by dkj updated Sep 2, 2021
@dozy
Use existing declarations for controlled vocabularies, rather than free strings in Heron metadata client enhancement
#578 opened Apr 22, 2020 by kjsanger updated Apr 22, 2020
Test for pools with samples from different studies is needed in seq alignment
#540 opened Nov 22, 2019 by mgcam updated Nov 22, 2019
Consider using quiet mode for gsutil cp
#458 opened May 15, 2019 by jmtcsngr updated May 15, 2019
should message directory be specific to an archival pipeline run?
#365 opened Aug 24, 2018 by mgcam updated Aug 24, 2018
messages are created by tests in the source tree of the package
#364 opened Aug 24, 2018 by mgcam updated Aug 24, 2018
Consider making priority functions a pipeline configuration option
#352 opened Aug 7, 2018 by dkj updated Aug 7, 2018
@mgcam
remove use and reference to position 1 in cluster count check
#351 opened Aug 7, 2018 by dkj updated Aug 7, 2018
@dozy
spatial filter autoqc check - command line is very long
#344 opened Aug 3, 2018 by mgcam updated Aug 3, 2018
1
Resolve possible overlap of lanes and data products in qc
#334 opened Jul 30, 2018 by dkj updated Jul 30, 2018
@dozy
log file name - choice and/or character escaping
#332 opened Jul 29, 2018 by dkj updated Jul 29, 2018
@dozy @mgcam
1
Provision of data to external customers via our S3
#330 opened Jul 28, 2018 by dkj updated Jul 28, 2018
shift default adapterfind logic up to base or a role
#294 opened Jun 1, 2018 by dkj updated Jun 1, 2018
@dozy
Tests for p4 stage one NovaSeq related changes
#293 opened Jun 1, 2018 by dkj updated Jun 1, 2018
@dozy
seq alignment tests need improvement
#262 opened Mar 2, 2018 by mgcam updated Mar 2, 2018
Requires WTSI::DNAP::Utilities::Loggable::Redirected
#221 opened May 23, 2017 by keithj updated Jun 8, 2017
1
LD_PRELOAD tcmalloc for bwa when threading >=8 enhancement
#201 opened Dec 1, 2016 by dkj updated Dec 1, 2016
ProTip! What’s not been updated in a month: updated:<2024-12-27.