Must-read papers on GNN

GNN: graph neural network

Contributed by Jie Zhou, Ganqu Cui and Zhengyan Zhang.

Content

Section
1. Survey
2. Models
3. Applications
Physics
Chemistry and Biology
Knowledge Graph
Recommender Systems
Computer Vision
Natural Language Processing
Generation
Combinatorial Optimization
Adversarial Attack
Graph Clustering
Reinforcement Learning
Traffic Network
Few-shot and Zero-shot Learning
Planning
Program Representation
Social Network

Survey papers

1. Graph Neural Networks: A Review of Methods and Applications. arxiv 2018. paper

   Jie Zhou, Ganqu Cui, Zhengyan Zhang, Cheng Yang, Zhiyuan Liu, Maosong Sun.

2. A Comprehensive Survey on Graph Neural Networks. arxiv 2019. paper

   Zonghan Wu, Shirui Pan, Fengwen Chen, Guodong Long, Chengqi Zhang, Philip S. Yu.

3. Deep Learning on Graphs: A Survey. arxiv 2018. paper

   Ziwei Zhang, Peng Cui, Wenwu Zhu.

4. Relational Inductive Biases, Deep Learning, and Graph Networks. arxiv 2018. paper

   Battaglia, Peter W and Hamrick, Jessica B and Bapst, Victor and Sanchez-Gonzalez, Alvaro and Zambaldi, Vinicius and Malinowski, Mateusz and Tacchetti, Andrea and Raposo, David and Santoro, Adam and Faulkner, Ryan and others.

5. Geometric Deep Learning: Going beyond Euclidean data. IEEE SPM 2017. paper

   Bronstein, Michael M and Bruna, Joan and LeCun, Yann and Szlam, Arthur and Vandergheynst, Pierre.

6. Computational Capabilities of Graph Neural Networks. IEEE TNN 2009. paper

   Scarselli, Franco and Gori, Marco and Tsoi, Ah Chung and Hagenbuchner, Markus and Monfardini, Gabriele.

7. Neural Message Passing for Quantum Chemistry. ICML 2017. paper

   Gilmer, Justin and Schoenholz, Samuel S and Riley, Patrick F and Vinyals, Oriol and Dahl, George E.

8. Non-local Neural Networks. CVPR 2018. paper

   Wang, Xiaolong and Girshick, Ross and Gupta, Abhinav and He, Kaiming.

9. The Graph Neural Network Model. IEEE TNN 2009. paper

   Scarselli, Franco and Gori, Marco and Tsoi, Ah Chung and Hagenbuchner, Markus and Monfardini, Gabriele.

Models

1. A new model for learning in graph domains. IJCNN 2005. paper

   Marco Gori, Gabriele Monfardini, Franco Scarselli.

2. Graph Neural Networks for Ranking Web Pages. WI 2005. paper

   Franco Scarselli, Sweah Liang Yong, Marco Gori, Markus Hagenbuchner, Ah Chung Tsoi, Marco Maggini.

3. Gated Graph Sequence Neural Networks. ICLR 2016. paper

   Yujia Li, Daniel Tarlow, Marc Brockschmidt, Richard Zemel.

4. Geometric deep learning on graphs and manifolds using mixture model cnns. CVPR 2017. paper

   Federico Monti, Davide Boscaini, Jonathan Masci, Emanuele Rodolà, Jan Svoboda, Michael M. Bronstein.

5. Spectral Networks and Locally Connected Networks on Graphs. ICLR 2014. paper

   Joan Bruna, Wojciech Zaremba, Arthur Szlam, Yann LeCun.

6. Deep Convolutional Networks on Graph-Structured Data. arxiv 2015. paper

   Mikael Henaff, Joan Bruna, Yann LeCun.

7. Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering. NIPS 2016. paper

   Michaël Defferrard, Xavier Bresson, Pierre Vandergheynst.

8. Learning Convolutional Neural Networks for Graphs. ICML 2016. paper

   Mathias Niepert, Mohamed Ahmed, Konstantin Kutzkov.

9. Semi-Supervised Classification with Graph Convolutional Networks. ICLR 2017. paper

   Thomas N. Kipf, Max Welling.

10. Graph Attention Networks. ICLR 2018. paper

    Petar Velickovic, Guillem Cucurull, Arantxa Casanova, Adriana Romero, Pietro Lio, Yoshua Bengio.

11. Deep Sets. NIPS 2017. paper

    Manzil Zaheer, Satwik Kottur, Siamak Ravanbakhsh, Barnabas Poczos, Ruslan Salakhutdinov, Alexander Smola.

12. Graph Partition Neural Networks for Semi-Supervised Classification. ICLR 2018. paper

    Renjie Liao, Marc Brockschmidt, Daniel Tarlow, Alexander L. Gaunt, Raquel Urtasun, Richard Zemel.

13. Covariant Compositional Networks For Learning Graphs. ICLR 2018. paper

    Risi Kondor, Hy Truong Son, Horace Pan, Brandon Anderson, Shubhendu Trivedi.

14. Modeling Relational Data with Graph Convolutional Networks. ESWC 2018. paper

    Michael Schlichtkrull, Thomas N. Kipf, Peter Bloem, Rianne van den Berg, Ivan Titov, Max Welling.

15. Stochastic Training of Graph Convolutional Networks with Variance Reduction. ICML 2018. paper

    Jianfei Chen, Jun Zhu, Le Song.

16. Learning Steady-States of Iterative Algorithms over Graphs. ICML 2018. paper

    Hanjun Dai, Zornitsa Kozareva, Bo Dai, Alex Smola, Le Song.

17. Deriving Neural Architectures from Sequence and Graph Kernels. ICML 2017. paper

    Tao Lei, Wengong Jin, Regina Barzilay, Tommi Jaakkola.

18. Adaptive Graph Convolutional Neural Networks. AAAI 2018. paper

    Ruoyu Li, Sheng Wang, Feiyun Zhu, Junzhou Huang.

19. Graph-to-Sequence Learning using Gated Graph Neural Networks. ACL 2018. paper

    Daniel Beck, Gholamreza Haffari, Trevor Cohn.

20. Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learning. AAAI 2018. paper

    Qimai Li, Zhichao Han, Xiao-Ming Wu.

21. Graphical-Based Learning Environments for Pattern Recognition. SSPR/SPR 2004. paper

    Franco Scarselli, Ah Chung Tsoi, Marco Gori, Markus Hagenbuchner.

22. A Comparison between Recursive Neural Networks and Graph Neural Networks. IJCNN 2006. paper

    Vincenzo Di Massa, Gabriele Monfardini, Lorenzo Sarti, Franco Scarselli, Marco Maggini, Marco Gori.

23. Graph Neural Networks for Object Localization. ECAI 2006. paper

    Gabriele Monfardini, Vincenzo Di Massa, Franco Scarselli, Marco Gori.

24. Knowledge-Guided Recurrent Neural Network Learning for Task-Oriented Action Prediction. ICME 2017. paper

    Liang Lin, Lili Huang, Tianshui Chen, Yukang Gan, Hui Cheng.

25. Semantic Object Parsing with Graph LSTM. ECCV 2016. paper

    Xiaodan Liang, Xiaohui Shen, Jiashi Feng, Liang Lin, Shuicheng Yan.

26. CelebrityNet: A Social Network Constructed from Large-Scale Online Celebrity Images. TOMM 2015. paper

    Li-Jia Li, David A. Shamma, Xiangnan Kong, Sina Jafarpour, Roelof Van Zwol, Xuanhui Wang.

27. Inductive Representation Learning on Large Graphs. NIPS 2017. paper

    William L. Hamilton, Rex Ying, Jure Leskovec.

28. Graph Classification using Structural Attention. KDD 2018. paper

    John Boaz Lee, Ryan Rossi, Xiangnan Kong.

29. Adversarial Attacks on Neural Networks for Graph Data. KDD 2018. paper

    Daniel Zügner, Amir Akbarnejad, Stephan Günnemann.

30. Large-Scale Learnable Graph Convolutional Networks. KDD 2018. paper

    Hongyang Gao, Zhengyang Wang, Shuiwang Ji.

31. Contextual Graph Markov Model: A Deep and Generative Approach to Graph Processing. ICML 2018. paper

    Davide Bacciu, Federico Errica, Alessio Micheli.

32. Diffusion-Convolutional Neural Networks. NIPS 2016. paper

    James Atwood, Don Towsley.

33. Neural networks for relational learning: an experimental comparison. Machine Learning 2011. paper

    Werner Uwents, Gabriele Monfardini, Hendrik Blockeel, Marco Gori, Franco Scarselli.

34. FastGCN: Fast Learning with Graph Convolutional Networks via Importance Sampling. ICLR 2018. paper

    Jie Chen, Tengfei Ma, Cao Xiao.

35. Adaptive Sampling Towards Fast Graph Representation Learning. NeurIPS 2018. paper

    Wenbing Huang, Tong Zhang, Yu Rong, Junzhou Huang.

36. Structure-Aware Convolutional Neural Networks. NeurIPS 2018. paper

    Jianlong Chang, Jie Gu, Lingfeng Wang, Gaofeng Meng, Shiming Xiang, Chunhong Pan.

37. Bayesian Semi-supervised Learning with Graph Gaussian Processes. NeurIPS 2018. paper

    Yin Cheng Ng, Nicolò Colombo, Ricardo Silva.

38. Mean-field theory of graph neural networks in graph partitioning. NeurIPS 2018. paper

    Tatsuro Kawamoto, Masashi Tsubaki, Tomoyuki Obuchi.

39. Hierarchical Graph Representation Learning with Differentiable Pooling. NeurIPS 2018. paper

    Zhitao Ying, Jiaxuan You, Christopher Morris, Xiang Ren, Will Hamilton, Jure Leskovec.

40. How Powerful are Graph Neural Networks? ICLR 2019. paper

    Keyulu Xu, Weihua Hu, Jure Leskovec, Stefanie Jegelka.

41. Graph Capsule Convolutional Neural Networks. ICML 2018 Workshop. paper

    Saurabh Verma, Zhi-Li Zhang.

42. Capsule Graph Neural Network. ICLR 2019. paper

    Zhang Xinyi, Lihui Chen.

43. Can GCNs Go as Deep as CNNs? arxiv 2019. paper

    Guohao Li, Matthias Müller, Ali Thabet, Bernard Ghanem.

44. Heterogeneous Graph Attention Network. WWW 2019. paper

    Xiao Wang, Houye Ji, Chuan Shi, Bai Wang, Peng Cui, P. Yu, Yanfang Ye.

45. Topology Optimization based Graph Convolutional Network. IJCAI 2019. paper

    Liang Yang, Zesheng Kang, Xiaochun Cao, Di Jin, Bo Yang, Yuanfang Guo.

46. SPAGAN: Shortest Path Graph Attention Network. IJCAI 2019. paper

    Yiding Yang, Xinchao Wang, Mingli Song, Junsong Yuan, Dacheng Tao.

47. Hierarchical Graph Convolutional Networks for Semi-supervised Node Classification. IJCAI 2019. paper

    Fenyu Hu, Yanqiao Zhu, Shu Wu, Liang Wang, Tieniu Tan.

48. Masked Graph Convolutional Network. IJCAI 2019. paper

    Liang Yang, Fan Wu, Yingkui Wang, Junhua Gu, Yuanfang Guo.

49. Dual Self-Paced Graph Convolutional Network: Towards Reducing Attribute Distortions Induced by Topology. IJCAI 2019. paper

    Liang Yang, Zhiyang Chen, Junhua Gu, Yuanfang Guo.

50. ActiveHNE: Active Heterogeneous Network Embedding. IJCAI 2019. paper

    Xia Chen, Guoxian Yu, Jun Wang, Carlotta Domeniconi, Zhao Li, Xiangliang Zhang.

51. GCN-LASE: Towards Adequately Incorporating Link Attributes in Graph Convolutional Networks. IJCAI 2019. paper

    Ziyao Li, Liang Zhang, Guojie Song.

52. Graph WaveNet for Deep Spatial-Temporal Graph Modeling. IJCAI 2019. paper

    Zonghan Wu, Shirui Pan, Guodong Long, Jing Jiang, Chengqi Zhang.

53. A Degeneracy Framework for Scalable Graph Autoencoders. IJCAI 2019. paper

    Guillaume Salha, Romain Hennequin, Viet Anh Tran, Michalis Vazirgiannis.

54. Representation Learning on Graphs with Jumping Knowledge Networks. ICML 2018. paper

    Keyulu Xu, Chengtao Li, Yonglong Tian, Tomohiro Sonobe, Ken-ichi Kawarabayashi, Stefanie Jegelka.

55. Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networks. AAAI 2019. paper

    Christopher Morris, Martin Ritzert, Matthias Fey, William L. Hamilton, Jan Eric Lenssen, Gaurav Rattan, Martin Grohe.

56. Hypergraph Neural Networks. AAAI 2019. paper

    Yifan Feng, Haoxuan You, Zizhao Zhang, Rongrong Ji, Yue Gao.

57. GeniePath: Graph Neural Networks with Adaptive Receptive Paths. AAAI 2019. paper

    Ziqi Liu, Chaochao Chen, Longfei Li, Jun Zhou, Xiaolong Li, Le Song, Yuan Qi.

58. Bayesian graph convolutional neural networks for semi-supervised classification. AAAI 2019. paper

    Yingxue Zhang, Soumyasundar Pal, Mark Coates, Deniz Üstebay.

59. Gaussian-Induced Convolution for Graphs. AAAI 2019. paper

    Jiatao Jiang, Zhen Cui, Chunyan Xu, Jian Yang.

60. Graph Learning-Convolutional Networks. CVPR 2019. paper

    Bo Jiang, Ziyan Zhang, Doudou Lin, Jin Tang.

61. Data Representation and Learning with Graph Diffusion-Embedding Networks. CVPR 2019. paper

    Bo Jiang, Doudou Lin, Jin Tang, Bin Luo.

62. Label Efficient Semi-Supervised Learning via Graph Filtering. CVPR 2019. paper

    Qimai Li, Xiao-Ming Wu, Han Liu, Xiaotong Zhang, Zhichao Guan.

63. Explainability Methods for Graph Convolutional Neural Networks. CVPR 2019. paper

    Phillip E. Pope, Soheil Kolouri, Mohammad Rostami, Charles E. Martin, Heiko Hoffmann.

64. Exploiting Edge Features in Graph Neural Networks. CVPR 2019. paper

    Liyu Gong, Qiang Cheng.

65. Deep Graph Infomax. ICLR 2019. paper

    Petar Veličković, William Fedus, William L. Hamilton, Pietro Liò, Yoshua Bengio, R Devon Hjelm.

66. Combining Neural Networks with Personalized PageRank for Classification on Graphs. ICLR 2019. paper

    Johannes Klicpera, Aleksandar Bojchevski, Stephan Günnemann.

67. Inference in Probabilistic Graphical Models by Graph Neural Networks. ICLR Workshop 2018. paper

    KiJung Yoon, Renjie Liao, Yuwen Xiong, Lisa Zhang, Ethan Fetaya, Raquel Urtasun, Richard Zemel, Xaq Pitkow.

68. Stability and Generalization of Graph Convolutional Neural Networks. KDD 2019. paper

    Saurabh Verma, Zhi-Li Zhang.

69. Representation Learning for Attributed Multiplex Heterogeneous Network. KDD 2019. paper

    Yukuo Cen, Xu Zou, Jianwei Zhang, Hongxia Yang, Jingren Zhou, Jie Tang.

70. Graph Convolutional Networks with EigenPooling. KDD 2019. paper

    Yao Ma, Suhang Wang, Charu C. Aggarwal, Jiliang Tang.

71. DEMO-Net: Degree-specific Graph Neural Networks for Node and Graph Classification. KDD 2019. paper

    Jun Wu, Jingrui He, Jiejun Xu.

72. Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks. KDD 2019. paper

    Wei-Lin Chiang, Xuanqing Liu, Si Si, Yang Li, Samy Bengio, Cho-Jui Hsieh.

73. Is a Single Vector Enough? Exploring Node Polysemy for Network Embedding. KDD 2019. paper

    Ninghao Liu, Qiaoyu Tan, Yuening Li, Hongxia Yang, Jingren Zhou, Xia Hu.

74. Graph Representation Learning via Hard and Channel-Wise Attention Networks. KDD 2019. paper

    Hongyang Gao, Shuiwang Ji.

75. Simplifying Graph Convolutional Networks. ICML 2019. paper

    Felix Wu, Tianyi Zhang, Amauri Holanda de Souza Jr., Christopher Fifty, Tao Yu, Kilian Q. Weinberger.

76. Disentangled Graph Convolutional Networks. ICML 2019. paper

    Jianxin Ma, Peng Cui, Kun Kuang, Xin Wang, Wenwu Zhu.

77. Position-aware Graph Neural Networks. ICML 2019. paper

    Jiaxuan You, Rex Ying, Jure Leskovec.

78. GMNN: Graph Markov Neural Networks. ICML 2019. paper

    Meng Qu, Yoshua Bengio, Jian Tang.

79. Learning Discrete Structures for Graph Neural Networks. ICML 2019. paper

    Luca Franceschi, Mathias Niepert, Massimiliano Pontil, Xiao He.

80. Self-Attention Graph Pooling. ICML 2019. paper

    Junhyun Lee, Inyeop Lee, Jaewoo Kang.

81. Graph U-Nets. ICML 2019. paper

    Hongyang Gao, Shuiwang Ji.

82. Relational Pooling for Graph Representations. ICML 2019. paper

    Ryan L. Murphy, Balasubramaniam Srinivasan, Vinayak Rao, Bruno Ribeiro.

83. Stochastic Blockmodels meet Graph Neural Networks. ICML 2019. paper

    Nikhil Mehta, Lawrence Carin, Piyush Rai.

84. MixHop: Higher-Order Graph Convolutional Architectures via Sparsified Neighborhood Mixing. ICML 2019. paper

    Sami Abu-El-Haija, Bryan Perozzi, Amol Kapoor, Nazanin Alipourfard, Kristina Lerman, Hrayr Harutyunyan, Greg Ver Steeg, Aram Galstyan.

85. LanczosNet: Multi-Scale Deep Graph Convolutional Networks. ICLR 2019. paper

    Renjie Liao, Zhizhen Zhao, Raquel Urtasun, Richard Zemel.

86. Invariant and Equivariant Graph Networks. ICLR 2019. paper

    Haggai Maron, Heli Ben-Hamu, Nadav Shamir, Yaron Lipman.

87. DyRep: Learning Representations over Dynamic Graphs. ICLR 2019. paper

    Rakshit Trivedi, Mehrdad Farajtabar, Prasenjeet Biswal, Hongyuan Zha.

88. Graph Wavelet Neural Network. ICLR 2019. paper

    Bingbing Xu, Huawei Shen, Qi Cao, Yunqi Qiu, Xueqi Cheng.

89. Predict then Propagate: Graph Neural Networks meet Personalized PageRank. ICLR 2019. paper

    Johannes Klicpera, Aleksandar Bojchevski, Stephan Günnemann.

Applications

1. Discovering objects and their relations from entangled scene representations. ICLR Workshop 2017. paper

   David Raposo, Adam Santoro, David Barrett, Razvan Pascanu, Timothy Lillicrap, Peter Battaglia.

2. A simple neural network module for relational reasoning. NIPS 2017. paper

   Adam Santoro, David Raposo, David G.T. Barrett, Mateusz Malinowski, Razvan Pascanu, Peter Battaglia, Timothy Lillicrap.

3. Attend, Infer, Repeat: Fast Scene Understanding with Generative Models. NIPS 2016. paper

   S. M. Ali Eslami, Nicolas Heess, Theophane Weber, Yuval Tassa, David Szepesvari, Koray Kavukcuoglu, Geoffrey E. Hinton.

4. Beyond Categories: The Visual Memex Model for Reasoning About Object Relationships. NIPS 2009. paper

   Tomasz Malisiewicz, Alyosha Efros.

5. Understanding Kin Relationships in a Photo. TMM 2012. paper

   Siyu Xia, Ming Shao, Jiebo Luo, Yun Fu.

6. Graph-Structured Representations for Visual Question Answering. CVPR 2017. paper

   Damien Teney, Lingqiao Liu, Anton van den Hengel.

7. Spatial Temporal Graph Convolutional Networks for Skeleton-Based Action Recognition. AAAI 2018. paper

   Sijie Yan, Yuanjun Xiong, Dahua Lin.

8. Few-Shot Learning with Graph Neural Networks. ICLR 2018. paper

   Victor Garcia, Joan Bruna.

9. The More You Know: Using Knowledge Graphs for Image Classification. CVPR 2017. paper

   Kenneth Marino, Ruslan Salakhutdinov, Abhinav Gupta.

10. Zero-shot Recognition via Semantic Embeddings and Knowledge Graphs. CVPR 2018. paper

    Xiaolong Wang, Yufei Ye, Abhinav Gupta.

11. Rethinking Knowledge Graph Propagation for Zero-Shot Learning. CVPR 2018. paper

    Michael Kampffmeyer, Yinbo Chen, Xiaodan Liang, Hao Wang, Yujia Zhang, Eric P. Xing.

12. Interaction Networks for Learning about Objects, Relations and Physics. NIPS 2016. paper

    Peter Battaglia, Razvan Pascanu, Matthew Lai, Danilo Rezende, Koray Kavukcuoglu.

13. A Compositional Object-Based Approach to Learning Physical Dynamics. ICLR 2017. paper

    Michael B. Chang, Tomer Ullman, Antonio Torralba, Joshua B. Tenenbaum.

14. Visual Interaction Networks: Learning a Physics Simulator from Video. NIPS 2017. paper

    Nicholas Watters, Andrea Tacchetti, Théophane Weber, Razvan Pascanu, Peter Battaglia, Daniel Zoran.

15. Relational neural expectation maximization: Unsupervised discovery of objects and their interactions. ICLR 2018. paper

    Sjoerd van Steenkiste, Michael Chang, Klaus Greff, Jürgen Schmidhuber.

16. Graph networks as learnable physics engines for inference and control. ICML 2018. paper

    Alvaro Sanchez-Gonzalez, Nicolas Heess, Jost Tobias Springenberg, Josh Merel, Martin Riedmiller, Raia Hadsell, Peter Battaglia.

17. Learning Multiagent Communication with Backpropagation. NIPS 2016. paper

    Sainbayar Sukhbaatar, Arthur Szlam, Rob Fergus.

18. VAIN: Attentional Multi-agent Predictive Modeling. NIPS 2017 paper

    Yedid Hoshen.

19. Neural Relational Inference for Interacting Systems. ICML 2018. paper

    Thomas Kipf, Ethan Fetaya, Kuan-Chieh Wang, Max Welling, Richard Zemel.

20. Translating Embeddings for Modeling Multi-relational Data. NIPS 2013. paper

    Antoine Bordes, Nicolas Usunier, Alberto Garcia-Duran, Jason Weston, Oksana Yakhnenko.

21. Representation learning for visual-relational knowledge graphs. arxiv 2017. paper

    Daniel Oñoro-Rubio, Mathias Niepert, Alberto García-Durán, Roberto González, Roberto J. López-Sastre.

22. Knowledge Transfer for Out-of-Knowledge-Base Entities : A Graph Neural Network Approach. IJCAI 2017. paper

    Takuo Hamaguchi, Hidekazu Oiwa, Masashi Shimbo, Yuji Matsumoto.

23. Representation Learning on Graphs with Jumping Knowledge Networks. ICML 2018. paper

    Keyulu Xu, Chengtao Li, Yonglong Tian, Tomohiro Sonobe, Ken-ichi Kawarabayashi, Stefanie Jegelka.

24. Multi-Label Zero-Shot Learning with Structured Knowledge Graphs. CVPR 2018. paper

    Chung-Wei Lee, Wei Fang, Chih-Kuan Yeh, Yu-Chiang Frank Wang.

25. Dynamic Graph Generation Network: Generating Relational Knowledge from Diagrams. CVPR 2018. paper

    Daesik Kim, Youngjoon Yoo, Jeesoo Kim, Sangkuk Lee, Nojun Kwak.

26. Deep Reasoning with Knowledge Graph for Social Relationship Understanding. IJCAI 2018. paper

    Zhouxia Wang, Tianshui Chen, Jimmy Ren, Weihao Yu, Hui Cheng, Liang Lin.

27. Constructing Narrative Event Evolutionary Graph for Script Event Prediction. IJCAI 2018. paper

    Zhongyang Li, Xiao Ding, Ting Liu.

28. Modeling Semantics with Gated Graph Neural Networks for Knowledge Base Question Answering. COLING 2018. paper

    Daniil Sorokin, Iryna Gurevych.

29. Convolutional networks on graphs for learning molecular fingerprints. NIPS 2015. paper

    David Duvenaud, Dougal Maclaurin, Jorge Aguilera-Iparraguirre, Rafael Gómez-Bombarelli, Timothy Hirzel, Alán Aspuru-Guzik, Ryan P. Adams.

30. Molecular Graph Convolutions: Moving Beyond Fingerprints. Journal of computer-aided molecular design 2016. paper

    Steven Kearnes, Kevin McCloskey, Marc Berndl, Vijay Pande, Patrick Riley.

31. Protein Interface Prediction using Graph Convolutional Networks. NIPS 2017. paper

    Alex Fout, Jonathon Byrd, Basir Shariat, Asa Ben-Hur.

32. Traffic Graph Convolutional Recurrent Neural Network: A Deep Learning Framework for Network-Scale Traffic Learning and Forecasting. arxiv 2018. paper

    Zhiyong Cui, Kristian Henrickson, Ruimin Ke, Yinhai Wang.

33. Spatio-Temporal Graph Convolutional Networks: A Deep Learning Framework for Traffic Forecasting. IJCAI 2018. paper

    Bing Yu, Haoteng Yin, Zhanxing Zhu.

34. Semi-supervised User Geolocation via Graph Convolutional Networks. ACL 2018. paper

    Afshin Rahimi, Trevor Cohn, Timothy Baldwin.

35. Dynamic Graph CNN for Learning on Point Clouds. CVPR 2018. paper

    Yue Wang, Yongbin Sun, Ziwei Liu, Sanjay E. Sarma, Michael M. Bronstein, Justin M. Solomon.

36. PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation. CVPR 2018. paper

    Charles R. Qi, Hao Su, Kaichun Mo, Leonidas J. Guibas.

37. 3D Graph Neural Networks for RGBD Semantic Segmentation. CVPR 2017. paper

    Xiaojuan Qi, Renjie Liao, Jiaya Jia, Sanja Fidler, Raquel Urtasun.

38. Iterative Visual Reasoning Beyond Convolutions. CVPR 2018. paper

    Xinlei Chen, Li-Jia Li, Li Fei-Fei, Abhinav Gupta.

39. Dynamic Edge-Conditioned Filters in Convolutional Neural Networks on Graphs. CVPR 2017. paper

    Martin Simonovsky, Nikos Komodakis.

40. Situation Recognition with Graph Neural Networks. ICCV 2017. paper

    Ruiyu Li, Makarand Tapaswi, Renjie Liao, Jiaya Jia, Raquel Urtasun, Sanja Fidler.

41. Conversation Modeling on Reddit using a Graph-Structured LSTM. TACL 2018. paper

    Vicky Zayats, Mari Ostendorf.

42. Attention Is All You Need. NIPS 2017. paper

    Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit, Llion Jones, Aidan N. Gomez, Lukasz Kaiser, Illia Polosukhin.

43. Self-Attention with Relative Position Representations. NAACL 2018. paper

    Peter Shaw, Jakob Uszkoreit, Ashish Vaswani.

44. Hyperbolic Attention Networks. arxiv 2018. paper

    Caglar Gulcehre, Misha Denil, Mateusz Malinowski, Ali Razavi, Razvan Pascanu, Karl Moritz Hermann, Peter Battaglia, Victor Bapst, David Raposo, Adam Santoro, Nando de Freitas

45. Effective Approaches to Attention-based Neural Machine Translation. EMNLP 2015. paper

    Minh-Thang Luong, Hieu Pham, Christopher D. Manning.

46. Graph Convolutional Encoders for Syntax-aware Neural Machine Translation. EMNLP 2017. paper

    Joost Bastings, Ivan Titov, Wilker Aziz, Diego Marcheggiani, Khalil Sima'an.

47. NerveNet: Learning Structured Policy with Graph Neural Networks. ICLR 2018. paper

    Tingwu Wang, Renjie Liao, Jimmy Ba, Sanja Fidler.

48. Metacontrol for Adaptive Imagination-Based Optimization. ICLR 2017. paper

    Jessica B. Hamrick, Andrew J. Ballard, Razvan Pascanu, Oriol Vinyals, Nicolas Heess, Peter W. Battaglia.

49. Learning model-based planning from scratch. arxiv 2017. paper

    Razvan Pascanu, Yujia Li, Oriol Vinyals, Nicolas Heess, Lars Buesing, Sebastien Racanière, David Reichert, Théophane Weber, Daan Wierstra, Peter Battaglia.

50. Structured Dialogue Policy with Graph Neural Networks. ICCL 2018. paper

    Lu Chen, Bowen Tan, Sishan Long, Kai Yu.

Physics

1. Discovering objects and their relations from entangled scene representations. ICLR Workshop 2017. paper

   David Raposo, Adam Santoro, David Barrett, Razvan Pascanu, Timothy Lillicrap, Peter Battaglia.

2. A simple neural network module for relational reasoning. NIPS 2017. paper

   Adam Santoro, David Raposo, David G.T. Barrett, Mateusz Malinowski, Razvan Pascanu, Peter Battaglia, Timothy Lillicrap.

3. Interaction Networks for Learning about Objects, Relations and Physics. NIPS 2016. paper

   Peter Battaglia, Razvan Pascanu, Matthew Lai, Danilo Rezende, Koray Kavukcuoglu.

4. Visual Interaction Networks: Learning a Physics Simulator from Video. NIPS 2017. paper

   Nicholas Watters, Andrea Tacchetti, Théophane Weber, Razvan Pascanu, Peter Battaglia, Daniel Zoran.

5. Graph networks as learnable physics engines for inference and control. ICML 2018. paper

   Alvaro Sanchez-Gonzalez, Nicolas Heess, Jost Tobias Springenberg, Josh Merel, Martin Riedmiller, Raia Hadsell, Peter Battaglia.

6. Learning Multiagent Communication with Backpropagation. NIPS 2016. paper

   Sainbayar Sukhbaatar, Arthur Szlam, Rob Fergus.

7. VAIN: Attentional Multi-agent Predictive Modeling. NIPS 2017 paper

   Yedid Hoshen.

8. Neural Relational Inference for Interacting Systems. ICML 2018. paper

   Thomas Kipf, Ethan Fetaya, Kuan-Chieh Wang, Max Welling, Richard Zemel.

9. Graph Element Networks: adaptive, structured computation and memory. ICML 2019. paper

   Ferran Alet, Adarsh K. Jeewajee, Maria Bauza, Alberto Rodriguez, Tomas Lozano-Perez, Leslie Pack Kaelbling.

Chemistry and Biology

1. Convolutional networks on graphs for learning molecular fingerprints. NIPS 2015. paper

   David Duvenaud, Dougal Maclaurin, Jorge Aguilera-Iparraguirre, Rafael Gómez-Bombarelli, Timothy Hirzel, Alán Aspuru-Guzik, Ryan P. Adams.

2. Molecular Graph Convolutions: Moving Beyond Fingerprints. Journal of computer-aided molecular design 2016. paper

   Steven Kearnes, Kevin McCloskey, Marc Berndl, Vijay Pande, Patrick Riley.

3. Protein Interface Prediction using Graph Convolutional Networks. NIPS 2017. paper

   Alex Fout, Jonathon Byrd, Basir Shariat, Asa Ben-Hur.

4. Hybrid Approach of Relation Network and Localized Graph Convolutional Filtering for Breast Cancer Subtype Classification. IJCAI 2018. paper

   Sungmin Rhee, Seokjun Seo, Sun Kim.

5. Modeling polypharmacy side effects with graph convolutional networks. ISMB 2018. paper

   Marinka Zitnik, Monica Agrawal, Jure Leskovec.

6. MR-GNN: Multi-Resolution and Dual Graph Neural Network for Predicting Structured Entity Interactions. IJCAI 2019. paper

   Nuo Xu, Pinghui Wang, Long Chen, Jing Tao, Junzhou Zhao.

7. Pre-training of Graph Augmented Transformers for Medication Recommendation. IJCAI 2019. paper

   Junyuan Shang, Tengfei Ma, Cao Xiao, Jimeng Sun.

8. GAMENet: Graph Augmented MEmory Networks for Recommending Medication Combination. AAAI 2019. paper

   Junyuan Shang, Cao Xiao, Tengfei Ma, Hongyan Li, Jimeng Sun.

9. AffinityNet: semi-supervised few-shot learning for disease type prediction. AAAI 2019. paper

   Tianle Ma, Aidong Zhang.

10. Graph Transformation Policy Network for Chemical Reaction Prediction. KDD 2019. paper

    Kien Do, Truyen Tran, Svetha Venkatesh.

11. Functional Transparency for Structured Data: a Game-Theoretic Approach. ICML 2019. paper

    Guang-He Lee, Wengong Jin, David Alvarez-Melis, Tommi S. Jaakkola.

12. Learning Multimodal Graph-to-Graph Translation for Molecular Optimization. ICLR 2019. paper

    Wengong Jin, Kevin Yang, Regina Barzilay, Tommi Jaakkola.

13. A Generative Model For Electron Paths. ICLR 2019. paper

    John Bradshaw, Matt J. Kusner, Brooks Paige, Marwin H. S. Segler, José Miguel Hernández-Lobato.

Knowledge Graph

1. Cross-lingual Knowledge Graph Alignment via Graph Convolutional Networks. EMNLP 2018. paper

   Zhichun Wang, Qingsong Lv, Xiaohan Lan, Yu Zhang.

2. Representation learning for visual-relational knowledge graphs. arxiv 2017. paper

   Daniel Oñoro-Rubio, Mathias Niepert, Alberto García-Durán, Roberto González, Roberto J. López-Sastre.

3. End-to-end Structure-Aware Convolutional Networks for Knowledge Base Completion. AAAI 2019. paper

   Chao Shang, Yun Tang, Jing Huang, Jinbo Bi, Xiaodong He, Bowen Zhou.

4. Knowledge Transfer for Out-of-Knowledge-Base Entities : A Graph Neural Network Approach. IJCAI 2017. paper

   Takuo Hamaguchi, Hidekazu Oiwa, Masashi Shimbo, Yuji Matsumoto.

5. Logic Attention Based Neighborhood Aggregation for Inductive Knowledge Graph Embedding. AAAI 2019. paper

   Peifeng Wang, Jialong Han, Chenliang Li, Rong Pan.

6. Dynamic Graph Generation Network: Generating Relational Knowledge from Diagrams. CVPR 2018. paper

   Haoyu Wang, Defu Lian, Yong Ge.

7. Estimating Node Importance in Knowledge Graphs Using Graph Neural Networks. KDD 2019. paper

   Namyong Park, Andrey Kan, Xin Luna Dong, Tong Zhao, Christos Faloutsos.

8. OAG: Toward Linking Large-scale Heterogeneous Entity Graphs. KDD 2019. paper

   Fanjin Zhang, Xiao Liu, Jie Tang, Yuxiao Dong, Peiran Yao, Jie Zhang, Xiaotao Gu, Yan Wang, Bin Shao, Rui Li, Kuansan Wang.

9. Learning Attention-based Embeddings for Relation Prediction in Knowledge Graphs. ACL 2019. paper

   Deepak Nathani, Jatin Chauhan, Charu Sharma, Manohar Kaul.

10. Cross-lingual Knowledge Graph Alignment via Graph Matching Neural Network. ACL 2019. paper

    Kun Xu, Mo Yu, Yansong Feng, Yan Song, Zhiguo Wang, Dong Yu.

Recommender Systems

1. Graph Convolutional Neural Networks for Web-Scale Recommender Systems. KDD 2018. paper

   Rex Ying, Ruining He, Kaifeng Chen, Pong Eksombatchai, William L. Hamilton, Jure Leskovec.

2. Geometric Matrix Completion with Recurrent Multi-Graph Neural Networks. NIPS 2017. paper

   Federico Monti, Michael M. Bronstein, Xavier Bresson.

3. Graph Convolutional Matrix Completion. 2017. paper

   Rianne van den Berg, Thomas N. Kipf, Max Welling.

4. STAR-GCN: Stacked and Reconstructed Graph Convolutional Networks for Recommender Systems. IJCAI 2019. paper

   Jiani Zhang, Xingjian Shi, Shenglin Zhao, Irwin King.

5. Binarized Collaborative Filtering with Distilling Graph Convolutional Networks. IJCAI 2019. paper

   Haoyu Wang, Defu Lian, Yong Ge.

6. Session-based Recommendation with Graph Neural Networks. AAAI 2019. paper

   Shu Wu, Yuyuan Tang, Yanqiao Zhu, Liang Wang, Xing Xie, Tieniu Tan.

7. Geometric Hawkes Processes with Graph Convolutional Recurrent Neural Networks. AAAI 2019. paper

   Jin Shang, Mingxuan Sun.

8. Knowledge-aware Graph Neural Networks with Label Smoothness Regularization for Recommender Systems. KDD 2019. paper

   Hongwei Wang, Fuzheng Zhang, Mengdi Zhang, Jure Leskovec, Miao Zhao, Wenjie Li, Zhongyuan Wang.

9. Exact-K Recommendation via Maximal Clique Optimization. KDD 2019. paper

   Yu Gong, Yu Zhu, Lu Duan, Qingwen Liu, Ziyu Guan, Fei Sun, Wenwu Ou, Kenny Q. Zhu.

10. KGAT: Knowledge Graph Attention Network for Recommendation. KDD 2019. paper

    Xiang Wang, Xiangnan He, Yixin Cao, Meng Liu, Tat-Seng Chua.

Computer Vision

1. Learning Human-Object Interactions by Graph Parsing Neural Networks. ECCV 2018. paper

   Siyuan Qi, Wenguan Wang, Baoxiong Jia, Jianbing Shen, Song-Chun Zhu.

2. Learning Conditioned Graph Structures for Interpretable Visual Question Answering. NeurIPS 2018. paper

   Will Norcliffe-Brown, Efstathios Vafeias, Sarah Parisot.

3. Symbolic Graph Reasoning Meets Convolutions. NeurIPS 2018. paper

   Xiaodan Liang, Zhiting Hu, Hao Zhang, Liang Lin, Eric P. Xing.

4. Out of the Box: Reasoning with Graph Convolution Nets for Factual Visual Question Answering. NeurIPS 2018. paper

   Medhini Narasimhan, Svetlana Lazebnik, Alexander Schwing.

5. Structural-RNN: Deep Learning on Spatio-Temporal Graphs. CVPR 2016. paper

   Ashesh Jain, Amir R. Zamir, Silvio Savarese, Ashutosh Saxena.

6. Relation Networks for Object Detection. CVPR 2018. paper

   Han Hu, Jiayuan Gu, Zheng Zhang, Jifeng Dai, Yichen Wei.

7. Learning Region features for Object Detection. ECCV 2018. paper

   Jiayuan Gu, Han Hu, Liwei Wang, Yichen Wei, Jifeng Dai.

8. The More You Know: Using Knowledge Graphs for Image Classification. CVPR 2017. paper

   Kenneth Marino, Ruslan Salakhutdinov, Abhinav Gupta.

9. Understanding Kin Relationships in a Photo. TMM 2012. paper

   Siyu Xia, Ming Shao, Jiebo Luo, Yun Fu.

10. Graph-Structured Representations for Visual Question Answering. CVPR 2017. paper

    Damien Teney, Lingqiao Liu, Anton van den Hengel.

11. Spatial Temporal Graph Convolutional Networks for Skeleton-Based Action Recognition. AAAI 2018. paper

    Sijie Yan, Yuanjun Xiong, Dahua Lin.

12. Dynamic Graph CNN for Learning on Point Clouds. CVPR 2018. paper

    Yue Wang, Yongbin Sun, Ziwei Liu, Sanjay E. Sarma, Michael M. Bronstein, Justin M. Solomon.

13. PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation. CVPR 2018. paper

    Charles R. Qi, Hao Su, Kaichun Mo, Leonidas J. Guibas.

14. 3D Graph Neural Networks for RGBD Semantic Segmentation. CVPR 2017. paper

    Xiaojuan Qi, Renjie Liao, Jiaya Jia, Sanja Fidler, Raquel Urtasun.

15. Iterative Visual Reasoning Beyond Convolutions. CVPR 2018. paper

    Xinlei Chen, Li-Jia Li, Li Fei-Fei, Abhinav Gupta.

16. Dynamic Edge-Conditioned Filters in Convolutional Neural Networks on Graphs. CVPR 2017. paper

    Martin Simonovsky, Nikos Komodakis.

17. Situation Recognition with Graph Neural Networks. ICCV 2017. paper

    Ruiyu Li, Makarand Tapaswi, Renjie Liao, Jiaya Jia, Raquel Urtasun, Sanja Fidler.

18. Deep Reasoning with Knowledge Graph for Social Relationship Understanding. IJCAI 2018. paper

    Zhouxia Wang, Tianshui Chen, Jimmy Ren, Weihao Yu, Hui Cheng, Liang Lin.

19. I Know the Relationships: Zero-Shot Action Recognition via Two-Stream Graph Convolutional Networks and Knowledge Graphs. AAAI 2019. paper

    Junyu Gao, Tianzhu Zhang, Changsheng Xu.

20. Graph CNNs with Motif and Variable Temporal Block for Skeleton-based Action Recognition. AAAI 2019. paper

    Yu-Hui Wen, Lin Gao, Hongbo Fu, Fang-Lue Zhang, Shihong Xia.

21. Multi-Label Image Recognition with Graph Convolutional Networks. CVPR 2019. paper

    Zhao-Min Chen, Xiu-Shen Wei, Peng Wang, Yanwen Guo.

22. Spatial-Aware Graph Relation Network for Large-Scale Object Detection. CVPR 2019. paper

    Hang Xu, Chenhan Jiang, Xiaodan Liang, Zhenguo Li.

23. GCAN: Graph Convolutional Adversarial Network for Unsupervised Domain Adaptation. CVPR 2019. paper

    Xinhong Ma, Tianzhu Zhang, Changsheng Xu.

24. Mind Your Neighbours: Image Annotation With Metadata Neighbourhood Graph Co-Attention Networks. CVPR 2019. paper

    Junjie Zhang, Qi Wu, Jian Zhang, Chunhua Shen, Jianfeng Lu.

25. Attentive Relational Networks for Mapping Images to Scene Graphs. CVPR 2019. paper

    Mengshi Qi, Weijian Li, Zhengyuan Yang, Yunhong Wang, Jiebo Luo.

26. Knowledge-Embedded Routing Network for Scene Graph Generation. CVPR 2019. paper

    Tianshui Chen, Weihao Yu, Riquan Chen, Liang Lin.

27. Auto-Encoding Scene Graphs for Image Captioning. CVPR 2019. paper

    Xu Yang, Kaihua Tang, Hanwang Zhang, Jianfei Cai.

28. Learning to Cluster Faces on an Affinity Graph. CVPR 2019. paper

    Lei Yang, Xiaohang Zhan, Dapeng Chen, Junjie Yan, Chen Change Loy, Dahua Lin.

29. Learning a Deep ConvNet for Multi-label Classification with Partial Labels. CVPR 2019. paper

    Thibaut Durand, Nazanin Mehrasa, Greg Mori.

30. Graph Convolutional Label Noise Cleaner: Train a Plug-and-play Action Classifier for Anomaly Detection. CVPR 2019. paper

    Jia-Xing Zhong, Nannan Li, Weijie Kong, Shan Liu, Thomas H. Li, Ge Li.

31. Learning Actor Relation Graphs for Group Activity Recognition. CVPR 2019. paper

    Jianchao Wu, Limin Wang, Li Wang, Jie Guo, Gangshan Wu.

32. ABC: A Big CAD Model Dataset For Geometric Deep Learning. CVPR 2019. paper

    Sebastian Koch, Albert Matveev, Zhongshi Jiang, Francis Williams, Alexey Artemov, Evgeny Burnaev, Marc Alexa, Denis Zorin, Daniele Panozzo.

33. Neighbourhood Watch: Referring Expression Comprehension via Language-guided Graph Attention Networks. CVPR 2019. paper

    Peng Wang, Qi Wu, Jiewei Cao, Chunhua Shen, Lianli Gao, Anton van den Hengel.

34. Graph-Based Global Reasoning Networks. CVPR 2019. paper

    Yunpeng Chen, Marcus Rohrbach, Zhicheng Yan, Shuicheng Yan, Jiashi Feng, Yannis Kalantidis.

35. Linkage Based Face Clustering via Graph Convolution Network. CVPR 2019. paper

    Zhongdao Wang, Liang Zheng, Yali Li, Shengjin Wang.

36. Fast Interactive Object Annotation with Curve-GCN. CVPR 2019. paper

    Huan Ling, Jun Gao, Amlan Kar, Wenzheng Chen, Sanja Fidler.

37. Semantic Graph Convolutional Networks for 3D Human Pose Regression. CVPR 2019. paper

    Long Zhao, Xi Peng, Yu Tian, Mubbasir Kapadia, Dimitris N. Metaxas.

38. Neural Task Graphs: Generalizing to Unseen Tasks from a Single Video Demonstration. CVPR 2019. paper

    De-An Huang, Suraj Nair, Danfei Xu, Yuke Zhu, Animesh Garg, Li Fei-Fei, Silvio Savarese, Juan Carlos Niebles.

39. Graphonomy: Universal Human Parsing via Graph Transfer Learning. CVPR 2019. paper

    Ke Gong, Yiming Gao, Xiaodan Liang, Xiaohui Shen, Meng Wang, Liang Lin.

40. Learning Context Graph for Person Search. CVPR 2019. paper

    Yichao Yan, Qiang Zhang, Bingbing Ni, Wendong Zhang, Minghao Xu, Xiaokang Yang.

41. Occlusion-Net: 2D/3D Occluded Keypoint Localization Using Graph Networks. CVPR 2019. paper

    N. Dinesh Reddy, Minh Vo, Srinivasa G. Narasimhan.

42. MAN: Moment Alignment Network for Natural Language Moment Retrieval via Iterative Graph Adjustment. CVPR 2019. paper

    Da Zhang, Xiyang Dai, Xin Wang, Yuan-Fang Wang, Larry S. Davis.

43. Context-Aware Visual Compatibility Prediction. CVPR 2019. paper

    Guillem Cucurull, Perouz Taslakian, David Vazquez.

44. Graph Attention Convolution for Point Cloud Semantic Segmentation. CVPR 2019. paper

    Lei Wang, Yuchun Huang, Yaolin Hou, Shenman Zhang, Jie Shan.

45. An Attention Enhanced Graph Convolutional LSTM Network for Skeleton-Based Action Recognition. CVPR 2019. paper

    Chenyang Si, Wentao Chen, Wei Wang, Liang Wang, Tieniu Tan.

46. Actional-Structural Graph Convolutional Networks for Skeleton-based Action Recognition. CVPR 2019. paper

    Maosen Li, Siheng Chen, Xu Chen, Ya Zhang, Yanfeng Wang, Qi Tian.

47. Graph Convolutional Tracking. CVPR 2019. paper

    Junyu Gao, Tianzhu Zhang, Changsheng Xu.

48. Two-Stream Adaptive Graph Convolutional Networks for Skeleton-Based Action Recognition. CVPR 2019. paper

    Lei Shi, Yifan Zhang, Jian Cheng, Hanqing Lu.

49. Skeleton-Based Action Recognition With Directed Graph Neural Networks. CVPR 2019. paper

    Lei Shi, Yifan Zhang, Jian Cheng, Hanqing Lu.

50. Neural Module Networks. CVPR 2016. paper

    Jacob Andreas, Marcus Rohrbach, Trevor Darrell, Dan Klein.

51. LatentGNN: Learning Efficient Non-local Relations for Visual Recognition. ICML 2019. paper

    Songyang Zhang, Shipeng Yan, Xuming He.

52. Graph Convolutional Gaussian Processes. ICML 2019. paper

    Ian Walker, Ben Glocker.

53. GEOMetrics: Exploiting Geometric Structure for Graph-Encoded Objects. ICML 2019. paper

    Edward J. Smith, Scott Fujimoto, Adriana Romero, David Meger.

Natural Language Processing

1. Conversation Modeling on Reddit using a Graph-Structured LSTM. TACL 2018. paper

   Vicky Zayats, Mari Ostendorf.

2. Learning Graphical State Transitions. ICLR 2017. paper

   Daniel D. Johnson.

3. Multiple Events Extraction via Attention-based Graph Information Aggregation. EMNLP 2018. paper

   Xiao Liu, Zhunchen Luo, Heyan Huang.

4. Recurrent Relational Networks. NeurIPS 2018. paper

   Rasmus Palm, Ulrich Paquet, Ole Winther.

5. Improved Semantic Representations From Tree-Structured Long Short-Term Memory Networks. ACL 2015. paper

   Kai Sheng Tai, Richard Socher, Christopher D. Manning.

6. Encoding Sentences with Graph Convolutional Networks for Semantic Role Labeling. EMNLP 2017. paper

   Diego Marcheggiani, Ivan Titov.

7. Graph Convolutional Networks with Argument-Aware Pooling for Event Detection. AAAI 2018. paper

   Thien Huu Nguyen, Ralph Grishman.

8. Exploiting Semantics in Neural Machine Translation with Graph Convolutional Networks. NAACL 2018. paper

   Diego Marcheggiani, Joost Bastings, Ivan Titov.

9. Exploring Graph-structured Passage Representation for Multi-hop Reading Comprehension with Graph Neural Networks. 2018. paper

   Linfeng Song, Zhiguo Wang, Mo Yu, Yue Zhang, Radu Florian, Daniel Gildea.

10. Graph Convolution over Pruned Dependency Trees Improves Relation Extraction. EMNLP 2018. paper

    Yuhao Zhang, Peng Qi, Christopher D. Manning.

11. N-ary relation extraction using graph state LSTM. EMNLP 18. paper

    Linfeng Song, Yue Zhang, Zhiguo Wang, Daniel Gildea.

12. A Graph-to-Sequence Model for AMR-to-Text Generation. ACL 2018. paper

    Linfeng Song, Yue Zhang, Zhiguo Wang, Daniel Gildea.

13. Cross-Sentence N-ary Relation Extraction with Graph LSTMs. TACL. paper

    Nanyun Peng, Hoifung Poon, Chris Quirk, Kristina Toutanova, Wen-tau Yih.

14. Sentence-State LSTM for Text Representation. ACL 2018. paper

    Yue Zhang, Qi Liu, Linfeng Song.

15. End-to-End Relation Extraction using LSTMs on Sequences and Tree Structures. ACL 2016. paper

    Makoto Miwa, Mohit Bansal.

16. Graph Convolutional Encoders for Syntax-aware Neural Machine Translation. EMNLP 2017. paper

    Joost Bastings, Ivan Titov, Wilker Aziz, Diego Marcheggiani, Khalil Sima'an.

17. Semi-supervised User Geolocation via Graph Convolutional Networks. ACL 2018. paper

    Afshin Rahimi, Trevor Cohn, Timothy Baldwin.

18. Modeling Semantics with Gated Graph Neural Networks for Knowledge Base Question Answering. COLING 2018. paper

    Daniil Sorokin, Iryna Gurevych.

19. Graph Convolutional Networks for Text Classification. AAAI 2019. paper

    Liang Yao, Chengsheng Mao, Yuan Luo.

20. Constructing Narrative Event Evolutionary Graph for Script Event Prediction. IJCAI 2018. paper

    Zhongyang Li, Xiao Ding, Ting Liu.

21. Incorporating Syntactic and Semantic Information in Word Embeddings using Graph Convolutional Networks. ACL 2019. paper

    Shikhar Vashishth, Manik Bhandari, Prateek Yadav, Piyush Rai, Chiranjib Bhattacharyya, Partha Talukdar

22. PaperRobot: Incremental Draft Generation of Scientific Ideas. ACL 2019. paper

    Qingyun Wang, Lifu Huang, Zhiying Jiang, Kevin Knight, Heng Ji, Mohit Bansal, Yi Luan.

23. Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network. ACL 2019. paper

    Sunil Kumar Sahu, Fenia Christopoulou, Makoto Miwa, Sophia Ananiadou.

24. Textbook Question Answering with Multi-modal Context Graph Understanding and Self-supervised Open-set Comprehension. ACL 2019. paper

    Daesik Kim, Seonhoon Kim, Nojun Kwak.

25. Multi-hop Reading Comprehension across Multiple Documents by Reasoning over Heterogeneous Graphs. ACL 2019. paper

    Ming Tu, Guangtao Wang, Jing Huang, Yun Tang, Xiaodong He, Bowen Zhou.

26. Dynamically Fused Graph Network for Multi-hop Reasoning. ACL 2019. paper

    Yunxuan Xiao, Yanru Qu, Lin Qiu, Hao Zhou, Lei Li, Weinan Zhang, Yong Yu.

27. Cognitive Graph for Multi-Hop Reading Comprehension at Scale. ACL 2019. paper

    Ming Ding, Chang Zhou, Qibin Chen, Hongxia Yang, Jie Tang.

28. Joint Type Inference on Entities and Relations via Graph Convolutional Networks. ACL 2019. paper

    Changzhi Sun, Yeyun Gong, Yuanbin Wu, Ming Gong, Daxing Jiang, Man Lan, Shiliang Sun1, Nan Duan.

29. Attention Guided Graph Convolutional Networks for Relation Extraction. ACL 2019. paper

    Zhijiang Guo, Yan Zhang, Wei Lu.

30. GraphRel: Modeling Text as Relational Graphs for Joint Entity and Relation Extraction. ACL 2019. paper

    Tsu-Jui Fu, Peng-Hsuan Li, Wei-Yun Ma.

31. Graph Neural Networks with Generated Parameters for Relation Extraction. ACL 2019. paper

    Hao Zhu, Yankai Lin, Zhiyuan Liu, Jie Fu, Tat-seng Chua, Maosong Sun.

32. Generating Logical Forms from Graph Representations of Text and Entities. ACL 2019. paper

    Peter Shaw, Philip Massey, Angelica Chen, Francesco Piccinno, Yasemin Altun.

33. Matching Article Pairs with Graphical Decomposition and Convolutions. ACL 2019. paper

    Bang Liu, Di Niu, Haojie Wei, Jinghong Lin, Yancheng He, Kunfeng Lai, Yu Xu.

34. Representing Schema Structure with Graph Neural Networks for Text-to-SQL Parsing. ACL 2019. paper

    Ben Bogin, Matt Gardner, Jonathan Berant.

35. Coherent Comment Generation for Chinese Articles with a Graph-to-Sequence Model. ACL 2019. paper

    Wei Li, Jingjing Xu, Yancheng He, Shengli Yan, Yunfang Wu, Xu sun.

36. Look Again at the Syntax: Relational Graph Convolutional Network for Gendered Ambiguous Pronoun Resolution. ACL 2019. paper

    Yinchuan Xu, Junlin Yang.

37. Structured Neural Summarization. ICLR 2019. paper

    Patrick Fernandes, Miltiadis Allamanis, Marc Brockschmidt.

Generation

1. Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation. NeurIPS 2018. paper

   Jiaxuan You, Bowen Liu, Rex Ying, Vijay Pande, Jure Leskovec.

2. Constrained Generation of Semantically Valid Graphs via Regularizing Variational Autoencoders. NeurIPS 2018. paper

   Tengfei Ma, Jie Chen, Cao Xiao.

3. Learning deep generative models of graphs. ICLR Workshop 2018. paper

   Yujia Li, Oriol Vinyals, Chris Dyer, Razvan Pascanu, Peter Battaglia.

4. MolGAN: An implicit generative model for small molecular graphs. 2018. paper

   Nicola De Cao, Thomas Kipf.

5. GraphRNN: Generating Realistic Graphs with Deep Auto-regressive Models. ICML 2018. paper

   Jiaxuan You, Rex Ying, Xiang Ren, William L. Hamilton, Jure Leskovec.

6. NetGAN: Generating Graphs via Random Walks. ICML 2018. paper

   Aleksandar Bojchevski, Oleksandr Shchur, Daniel Zügner, Stephan Günnemann.

7. Graphite: Iterative Generative Modeling of Graphs. ICML 2019. paper

   Aditya Grover, Aaron Zweig, Stefano Ermon.

8. Generative Code Modeling with Graphs. ICLR 2019. paper

   Marc Brockschmidt, Miltiadis Allamanis, Alexander L. Gaunt, Oleksandr Polozov.

Combinatorial Optimization

1. Combinatorial Optimization with Graph Convolutional Networks and Guided Tree Search. NeurIPS 2018. paper

   Zhuwen Li, Qifeng Chen, Vladlen Koltun.

2. Learning a SAT Solver from Single-Bit Supervision. ICLR 2019. paper

   Daniel Selsam, Matthew Lamm, Benedikt Bünz, Percy Liang, Leonardo de Moura, David L. Dill.

3. A Note on Learning Algorithms for Quadratic Assignment with Graph Neural Networks. PADL 2017. paper

   Alex Nowak, Soledad Villar, Afonso S. Bandeira, Joan Bruna.

4. Attention Solves Your TSP, Approximately. 2018. paper

   Wouter Kool, Herke van Hoof, Max Welling.

5. Learning to Solve NP-Complete Problems - A Graph Neural Network for Decision TSP. AAAI 2019. paper

   Marcelo O. R. Prates, Pedro H. C. Avelar, Henrique Lemos, Luis Lamb, Moshe Vardi.

6. DAG-GNN: DAG Structure Learning with Graph Neural Networks. ICML 2019. paper

   Yue Yu, Jie Chen, Tian Gao, Mo Yu.

Adversarial Attack

1. Adversarial Attack on Graph Structured Data. ICML 2018. paper

   Hanjun Dai, Hui Li, Tian Tian, Xin Huang, Lin Wang, Jun Zhu, Le Song.

2. Adversarial Examples on Graph Data: Deep Insights into Attack and Defense. IJCAI 2019. paper

   Huijun Wu, Chen Wang, Yuriy Tyshetskiy, Andrew Docherty, Kai Lu, Liming Zhu.

3. Topology Attack and Defense for Graph Neural Networks: An Optimization Perspective. IJCAI 2019. paper

   Kaidi Xu, Hongge Chen, Sijia Liu, Pin-Yu Chen, Tsui-Wei Weng, Mingyi Hong, Xue Lin.

4. Robust Graph Convolutional Networks Against Adversarial Attacks. KDD 2019. paper

   Dingyuan Zhu, Ziwei Zhang, Peng Cui, Wenwu Zhu.

5. Certifiable Robustness and Robust Training for Graph Convolutional Networks. KDD 2019. paper

   Daniel Zügner, Stephan Günnemann.

6. Adversarial Attacks on Node Embeddings via Graph Poisoning. ICML 2019. paper

   Aleksandar Bojchevski, Stephan Günnemann.

7. Adversarial Attacks on Graph Neural Networks via Meta Learning. ICLR 2019. paper

   Daniel Zügner, Stephan Günnemann.

8. PeerNets: Exploiting Peer Wisdom Against Adversarial Attacks. ICLR 2019. paper

   Jan Svoboda, Jonathan Masci, Federico Monti, Michael Bronstein, Leonidas Guibas.

Graph Clustering

1. Attributed Graph Clustering: A Deep Attentional Embedding Approach. IJCAI 2019. paper

   Chun Wang, Shirui Pan, Ruiqi Hu, Guodong Long, Jing Jiang, Chengqi Zhang.

2. Attributed Graph Clustering via Adaptive Graph Convolution. IJCAI 2019. paper

   Xiaotong Zhang, Han Liu, Qimai Li, Xiao-Ming Wu.

Reinforcement Learning

1. NerveNet: Learning Structured Policy with Graph Neural Networks. ICLR 2018. paper

   Tingwu Wang, Renjie Liao, Jimmy Ba, Sanja Fidler.

2. Structured Dialogue Policy with Graph Neural Networks. ICCL 2018. paper

   Lu Chen, Bowen Tan, Sishan Long, Kai Yu.

3. Relational inductive bias for physical construction in humans and machines. CogSci 2018. paper

   Jessica B. Hamrick, Kelsey R. Allen, Victor Bapst, Tina Zhu, Kevin R. McKee, Joshua B. Tenenbaum, Peter W. Battaglia.

4. Relational Deep Reinforcement Learning. arxiv 2018. paper

   Vinicius Zambaldi, David Raposo, Adam Santoro, Victor Bapst, Yujia Li, Igor Babuschkin, Karl Tuyls, David Reichert, Timothy Lillicrap, Edward Lockhart, Murray Shanahan, Victoria Langston, Razvan Pascanu, Matthew Botvinick, Oriol Vinyals, Peter Battaglia.

Traffic Network

1. Spatiotemporal Multi‐Graph Convolution Network for Ride-hailing Demand Forecasting. AAAI 2019. paper

   Xu Geng, Yaguang Li, Leye Wang, Lingyu Zhang, Qiang Yang, Jieping Ye, Yan Liu.

2. Attention Based Spatial-Temporal Graph Convolutional Networks for Traffic Flow Forecasting. AAAI 2019. paper

   Shengnan Guo, Youfang Lin, Ning Feng, Chao Song, Huaiyu Wan.

3. Traffic Graph Convolutional Recurrent Neural Network: A Deep Learning Framework for Network-Scale Traffic Learning and Forecasting. arxiv 2018. paper

   Zhiyong Cui, Kristian Henrickson, Ruimin Ke, Yinhai Wang.

4. Spatio-Temporal Graph Convolutional Networks: A Deep Learning Framework for Traffic Forecasting. IJCAI 2018. paper

   Bing Yu, Haoteng Yin, Zhanxing Zhu.

5. Origin-Destination Matrix Prediction via Graph Convolution: a New Perspective of Passenger Demand Modeling. KDD 2019. paper

   Yuandong Wang, Hongzhi Yin, Hongxu Chen, Tianyu Wo, Jie Xu, Kai Zheng.

6. Predicting Path Failure In Time-Evolving Graphs. KDD 2019. paper

   Jia Li, Zhichao Han, Hong Cheng, Jiao Su, Pengyun Wang, Jianfeng Zhang, Lujia Pan.

Few-shot and Zero-shot Learning

1. Few-Shot Learning with Graph Neural Networks. ICLR 2018. paper

   Victor Garcia, Joan Bruna.

2. Prototype Propagation Networks (PPN) for Weakly-supervised Few-shot Learning on Category Graph. IJCAI 2019. paper

   Lu Liu, Tianyi Zhou, Guodong Long, Jing Jiang, Lina Yao, Chengqi Zhang.

3. Edge-labeling Graph Neural Network for Few-shot Learning. CVPR 2019. paper

   Jongmin Kim, Taesup Kim, Sungwoong Kim, Chang D. Yoo.

4. Generating Classification Weights with GNN Denoising Autoencoders for Few-Shot Learning. CVPR 2019. paper

   Spyros Gidaris, Nikos Komodakis.

5. Zero-shot Recognition via Semantic Embeddings and Knowledge Graphs. CVPR 2018. paper

   Xiaolong Wang, Yufei Ye, Abhinav Gupta.

6. Rethinking Knowledge Graph Propagation for Zero-Shot Learning. CVPR 2019. paper

   Michael Kampffmeyer, Yinbo Chen, Xiaodan Liang, Hao Wang, Yujia Zhang, Eric P. Xing.

7. Multi-Label Zero-Shot Learning with Structured Knowledge Graphs. CVPR 2018. paper

   Chung-Wei Lee, Wei Fang, Chih-Kuan Yeh, Yu-Chiang Frank Wang.

Reinforcement Learning

1. Relational inductive bias for physical construction in humans and machines. CogSci 2018. paper

   Jessica B. Hamrick, Kelsey R. Allen, Victor Bapst, Tina Zhu, Kevin R. McKee, Joshua B. Tenenbaum, Peter W. Battaglia.

2. Relational Deep Reinforcement Learning. 2018. paper

   Vinicius Zambaldi, David Raposo, Adam Santoro, Victor Bapst, Yujia Li, Igor Babuschkin, Karl Tuyls, David Reichert, Timothy Lillicrap, Edward Lockhart, Murray Shanahan, Victoria Langston, Razvan Pascanu, Matthew Botvinick, Oriol Vinyals, Peter Battaglia.

Planning

1. Action Schema Networks: Generalised Policies with Deep Learning. AAAI 2018. paper

   Sam Toyer, Felipe Trevizan, Sylvie Thiébaux, Lexing Xie.

Program Representation

1. Learning to Represent Programs with Graphs. ICLR 2018. paper

   Miltiadis Allamanis, Marc Brockschmidt, Mahmoud Khademi.

2. Open Vocabulary Learning on Source Code with a Graph-Structured Cache. ICML 2019. paper

   Milan Cvitkovic, Badal Singh, Anima Anandkumar.

Social Network

1. DeepInf: Social Influence Prediction with Deep Learning. KDD 2018. paper

   Jiezhong Qiu, Jian Tang, Hao Ma, Yuxiao Dong, Kuansan Wang, Jie Tang.

2. Characterizing and Forecasting User Engagement with In-app Action Graph: A Case Study of Snapchat. KDD 2019. paper

   Yozen Liu, Xiaolin Shi, Lucas Pierce, Xiang Ren.

3. MCNE: An End-to-End Framework for Learning Multiple Conditional Network Representations of Social Network. KDD 2019. paper

   Hao Wang, Tong Xu, Qi Liu, Defu Lian, Enhong Chen, Dongfang Du, Han Wu, Wen Su.

4. Encoding Social Information with Graph Convolutional Networks for Political Perspective Detection in News Media. ACL 2019. paper

   Chang Li, Dan Goldwasser.