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inxihaoli/STAARpipeline-Tutorial (press backspace or delete to remove)

Hi,Xihao, I encountered an issue while using the STAARpipeline tool for dynamic window analysis. My goal is to compare the results from STAARpipeline with the results from my existing GWAS data. However, ...
  • mzw-jyz
  • Opened 
    11 days ago
  • #75

Hi Professor Li, I have successfully completed building the null model as per your instructions. However, I have encountered a few issues while running Step 5: Dynamic window analysis using SCANG-STAAR, ...
  • mzw-jyz
  • Opened 
    on Dec 22, 2024
  • #74

Hi Xihao, I am currently using the STAARpipeline tool for data association analysis and encountered the following issues while running STAARpipeline_Null_Model.r : **1.**The fit_nullmodel function requires ...
  • mzw-jyz
  • 5
  • Opened 
    on Dec 13, 2024
  • #73

Hello Dr. Li, I have a question regarding the functional annotation scores in FAVOR. I noticed that the original values are used in STAARpipeline (e.g., ,linsight). In the tutorial of STAAR, the website ...
  • liangshy3
  • 11
  • Opened 
    on Nov 20, 2024
  • #72

Hi, I was trying to use fit_nullmodel to fit an outcome with quasipoisson, the code is as followed obj_nullmodel - fit_nullmodel(hsCRP ~ Age_at_V1+PC01+PC02+PC03+PC04+PC05+PC06+PC07+PC08+PC09+PC10, ...
  • yu-zhang-oYo
  • 3
  • Opened 
    on Oct 28, 2024
  • #71

Hi, I am currently attempting to perform an association analysis on noncoding regions using WES data. However, while executing 379 array jobs, some of the jobs failed with an error. Could this issue be ...
  • sawakof
  • 6
  • Opened 
    on Oct 24, 2024
  • #70

Hello. I am trying to run the STAARpipeline on WES data with a binary trait. I successfully created the aGDS and GRM, but when applying the Null Model, since it is a binary trait, I used: obj_nullmodel ...
  • sawakof
  • 2
  • Opened 
    on Oct 2, 2024
  • #69

When summarizing the results of the coding region, what is the difference between the results_temp and results_m results?
  • jingydz
  • 2
  • Opened 
    on Aug 24, 2024
  • #68

Is it acceptable for a few samples to exhibit the following error during the Dynamic_window step? #######-- Dynamic_window Start time is 2024/08/22--16:22 --####### used (Mb) gc trigger (Mb) max used ...
  • jingydz
  • 1
  • Opened 
    on Aug 23, 2024
  • #67

It seems that I have properly executed the preparatory steps, as well as step zero and step one, and I have successfully obtained the files agds_dir.Rdata, Annotation_name_catalog.Rdata, and jobs_num.Rdata. ...
  • jingydz
  • 3
  • Opened 
    on Aug 19, 2024
  • #66
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