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inxihaoli/STAARpipeline-Tutorial (press backspace or delete to remove)Hi,Xihao, I encountered an issue while using the STAARpipeline tool for dynamic window analysis. My goal is to compare
the results from STAARpipeline with the results from my existing GWAS data. However, ...
- mzw-jyz
- Opened 10 days ago
- #75
Hi Professor Li, I have successfully completed building the null model as per your instructions. However, I have
encountered a few issues while running Step 5: Dynamic window analysis using SCANG-STAAR, ...
- mzw-jyz
- Opened on Dec 22, 2024
- #74
Hi Xihao,
I am currently using the STAARpipeline tool for data association analysis and encountered the following issues while
running STAARpipeline_Null_Model.r :
**1.**The fit_nullmodel function requires ...
- mzw-jyz
- 5
- Opened on Dec 13, 2024
- #73
Hello Dr. Li,
I have a question regarding the functional annotation scores in FAVOR. I noticed that the original values are used in
STAARpipeline (e.g., ,linsight). In the tutorial of STAAR, the website ...
- liangshy3
- 11
- Opened on Nov 20, 2024
- #72
Hi, I was trying to use fit_nullmodel to fit an outcome with quasipoisson, the code is as followed
obj_nullmodel - fit_nullmodel(hsCRP ~ Age_at_V1+PC01+PC02+PC03+PC04+PC05+PC06+PC07+PC08+PC09+PC10,
...
- yu-zhang-oYo
- 3
- Opened on Oct 28, 2024
- #71
Hi,
I am currently attempting to perform an association analysis on noncoding regions using WES data. However, while
executing 379 array jobs, some of the jobs failed with an error. Could this issue be ...
- sawakof
- 6
- Opened on Oct 24, 2024
- #70
Hello. I am trying to run the STAARpipeline on WES data with a binary trait. I successfully created the aGDS and GRM,
but when applying the Null Model, since it is a binary trait, I used:
obj_nullmodel ...
- sawakof
- 2
- Opened on Oct 2, 2024
- #69
When summarizing the results of the coding region, what is the difference between the results_temp and results_m
results?
- jingydz
- 2
- Opened on Aug 24, 2024
- #68
Is it acceptable for a few samples to exhibit the following error during the Dynamic_window step?
#######-- Dynamic_window Start time is 2024/08/22--16:22 --####### used (Mb) gc trigger (Mb) max used ...
- jingydz
- 1
- Opened on Aug 23, 2024
- #67
It seems that I have properly executed the preparatory steps, as well as step zero and step one, and I have successfully
obtained the files agds_dir.Rdata, Annotation_name_catalog.Rdata, and jobs_num.Rdata. ...
- jingydz
- 3
- Opened on Aug 19, 2024
- #66
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