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Issues list

Feature request: allow passing phred scores in python interface enhancement New feature or request
#54 opened Oct 17, 2023 by shenker
Finish-off pushing wheels from CI
#64 opened Feb 27, 2024 by cjw85
Use seeding from the pyaboa
#74 opened Aug 8, 2024 by shokrof
abPOA puts big gap in middle of sequence
#36 opened Mar 23, 2022 by glennhickey
2
Does not accept other characters aside from A, C, T, and G (DNA Sequence)
#46 opened Apr 7, 2023 by kcjavier21
2
-S option for pyabpoa
#47 opened Apr 16, 2023 by christopher-vollmers
2
install make error
#63 opened Feb 21, 2024 by JXAUDZF
2
Multiple Consensus Sequences Miss Alleles
#73 opened Jul 27, 2024 by Lidweixiang
3
MSA anchoring
#70 opened May 24, 2024 by rmhubley
4
Backtrack errors when trying different scoring matrices
#79 opened Oct 29, 2024 by glennhickey
4
Align expanded sequences, trim them and then compute the consensus sequence
#30 opened Oct 11, 2021 by AndreaGuarracino
6
abPOA user specifiable seeds
#37 opened Mar 24, 2022 by benedictpaten
6
Homopolymer indels not consistently aligned
#48 opened May 31, 2023 by rlorigro
6
optimum parameters for ONT reads
#68 opened Apr 30, 2024 by asylvz
6
abPOA conda installer broken?
#42 opened Mar 20, 2023 by Koen-vdl
7
Remove low coverage bases from consensus sequence?
#67 opened Apr 16, 2024 by jiaan-yu
7
Incremental update of the graph enhancement New feature or request
#16 opened Jan 12, 2021 by huguesrichard
8
Consensus coverage in diploid mode
#29 opened Sep 13, 2021 by ldenti
8
abPOA prune graph
#71 opened Jun 24, 2024 by cgroza
9
Better global alignment when aligning in other direction
#78 opened Oct 17, 2024 by glennhickey
9
pyabpoa: segmentation fault with version 1.5.2
#75 opened Aug 13, 2024 by shokrof
13
PyPI package does not install
#41 opened Oct 14, 2022 by cjw85
14
GFA output
#2 opened Sep 19, 2020 by ekg
15
[simd_abpoa_align_sequence_to_subgraph1] Error in cg_backtrack. (4)
#9 opened Oct 6, 2020 by ekg
17
Is there any way to reduce memory consumption?
#14 opened Oct 20, 2020 by glennhickey
24
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