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16 stars written in Perl
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cpanminus - get, unpack, build and install modules from CPAN

Perl 755 213 Updated Oct 31, 2024

MITObim - mitochondrial baiting and iterative mapping

Perl 111 34 Updated Dec 29, 2020

Tools for working with second gen assemblies, fasta sequences, etc

Perl 92 36 Updated Sep 8, 2016

RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…

Perl 65 26 Updated Nov 22, 2022

Genome Scripts used in fungal comparative genomics

Perl 65 58 Updated Sep 25, 2020

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniP…

Perl 54 28 Updated May 11, 2020

A tutorial for learning de novo assembly

Perl 33 8 Updated Dec 8, 2011

Manipulate FASTA files

Perl 30 10 Updated Aug 26, 2014

Workflows I find helpful for fungal genome annotation

Perl 20 11 Updated Jun 30, 2023

Transcript to Genome Consistency Network

Perl 16 5 Updated Jun 19, 2012

NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of u…

Perl 15 2 Updated Mar 28, 2017

Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.

Perl 11 2 Updated Nov 30, 2023

Tools for analysis of RAD Sequencing data

Perl 6 2 Updated Feb 7, 2012
Perl 2 3 Updated Feb 24, 2017

A few scripts for turning a vanilla NCBI wwwblast installation into a link filled paradise.

Perl 2 Updated Mar 30, 2011