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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(HMMsegment)
export(betapdflog)
export(completeLikelihoodFun)
export(computeBIC)
export(correctIntegerCN)
export(correctReadCounts)
export(covarIWUpdateEqn)
export(covarUpdateEqn)
export(createPanelOfNormals)
export(data.fit)
export(dirichletpdf)
export(dirichletpdflog)
export(estimateGaussianParamsMap)
export(estimateMixWeightsParamMap)
export(estimatePrecisionParamMap)
export(estimateTParamsMap)
export(excludeCentromere)
export(filterByMappabilityScore)
export(filterByTargetedSequences)
export(gammapdflog)
export(get2ComponentMixture)
export(get2and3ComponentMixture)
export(getCovarianceMatrix)
export(getDefaultParameters)
export(getGender)
export(getGenomeWidePositions)
export(getNormLik)
export(getSeqInfo)
export(getTransitionMatrix)
export(invWishartpdflog)
export(invgammapdflog)
export(keepChr)
export(loadReadCountsFromWig)
export(logRbasedCN)
export(multiGammaFunlog)
export(mvGaussDistPDF)
export(nUpdateEqn)
export(normalize)
export(normalizeByPanelOrMatchedNormal)
export(normalpdf)
export(outputHMM)
export(outputParametersToFile)
export(phiUpdateEqn)
export(plotCNlogRByChr)
export(plotChrLines)
export(plotCorrectionGenomeWide)
export(plotCovarBias)
export(plotFitCompareByChr)
export(plotGWSolution)
export(plotIchorCNAzoom)
export(plotParam)
export(plotSolutions)
export(priorProbs)
export(runEM)
export(runViterbi)
export(run_ichorCNA)
export(segmentData)
export(selectFemaleChrXSolution)
export(spUpdateEqn)
export(stLikelihood)
export(tdistPDF)
export(varUpdateEqn)
export(wigToGRanges)