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:::{grid-item-card} Installation {octicon}plug;1em; 🔗 installation :link-type: doc

New to scanpy? Check out the installation guide. :::

:::{grid-item-card} Tutorials {octicon}play;1em; 🔗 _tutorials :link-type: doc

The tutorials walk you through real-world applications of scanpy. :::

:::{grid-item-card} API reference {octicon}book;1em; 🔗 api/index :link-type: doc

The API reference contains a detailed description of the scanpy API. :::

:::{grid-item-card} Discussion {octicon}megaphone;1em; 🔗 https://discourse.scverse.org

Need help? Reach out on our forum to get your questions answered! :::

:::{grid-item-card} GitHub {octicon}mark-github;1em; 🔗 https://github.com/scverse/scanpy

Find a bug? Interested in improving scanpy? Checkout our GitHub for the latest developments. ::: ::::

Other resources

  • Follow changes in the {ref}release notes <release-notes>.
  • Find tools that harmonize well with anndata & Scanpy via the {doc}external API <external/index> and the {doc}ecosystem page <ecosystem>.
  • Check out our {ref}contributing guide <contribution-guide> for development practices.
  • Consider citing Genome Biology (2018) along with original {doc}references <references>.

News

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{ref}(past news) <News>

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_tutorials
usage-principles
installation
api/index
external/index
ecosystem
release-notes/index
community
news
dev/index
contributors
references