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This is where you can learn about all the things you can do with MNE. It contains background information and tutorials for taking a deep-dive into the techniques that MNE-python covers. You'll find practical information on how to use these methods with your data, and in many cases some high-level concepts underlying these methods.
There are also examples, which contain a short use-case to highlight MNE-functionality and provide inspiration for the many things you can do with this package. You can also find a gallery of these examples in the examples gallery.
See the links below for an introduction to MNE-python, or click one of the sections on this page to see more.
Getting started
.. toctree::
:maxdepth: 1
getting_started.rst
advanced_setup.rst
auto_tutorials/plot_python_intro.rst
MNE basics
.. toctree::
:maxdepth: 1
tutorials/philosophy.rst
manual/cookbook.rst
whats_new.rst
python_reference.rst
glossary.rst
auto_examples/index.rst
generated/commands.rst
auto_tutorials/plot_configuration.rst
cited.rst
faq.rst
More help
- :ref:`Cite MNE <cite>`
- Mailing list for analysis talk
- GitHub issues for requests and bug reports
- Gitter to chat with devs
.. toctree::
:maxdepth: 1
auto_tutorials/plot_object_raw.rst
auto_tutorials/plot_object_epochs.rst
auto_tutorials/plot_object_evoked.rst
auto_tutorials/plot_object_source_estimate.rst
auto_tutorials/plot_info.rst
auto_tutorials/plot_object_annotations.rst
Getting your data into MNE
.. toctree::
:maxdepth: 1
manual/io.rst
auto_tutorials/plot_creating_data_structures.rst
auto_tutorials/plot_metadata_epochs.rst
auto_tutorials/plot_modifying_data_inplace.rst
auto_tutorials/plot_ecog.rst
manual/memory.rst
manual/migrating.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/io/plot_elekta_epochs.rst
auto_examples/io/plot_objects_from_arrays.rst
auto_examples/io/plot_read_and_write_raw_data.rst
auto_examples/io/plot_read_epochs.rst
auto_examples/io/plot_read_events.rst
auto_examples/io/plot_read_evoked.rst
auto_examples/io/plot_read_noise_covariance_matrix.rst
Working with public datasets
.. toctree::
:maxdepth: 1
manual/datasets_index.rst
auto_tutorials/plot_brainstorm_auditory.rst
auto_tutorials/plot_brainstorm_phantom_ctf.rst
auto_tutorials/plot_brainstorm_phantom_elekta.rst
auto_tutorials/plot_phantom_4DBTi.rst
auto_examples/datasets/plot_brainstorm_data.rst
auto_examples/datasets/plot_opm_data.rst
auto_examples/datasets/plot_megsim_data.rst
auto_examples/datasets/plot_megsim_data_single_trial.rst
auto_examples/datasets/spm_faces_dataset.rst
Background
.. toctree::
:maxdepth: 1
auto_tutorials/plot_background_filtering.rst
manual/preprocessing/ssp.rst
manual/preprocessing/ica.rst
manual/preprocessing/maxwell.rst
manual/channel_interpolation.rst
Preprocessing your data
.. toctree::
:maxdepth: 1
auto_tutorials/plot_artifacts_detection.rst
auto_tutorials/plot_artifacts_correction_filtering.rst
auto_tutorials/plot_artifacts_correction_rejection.rst
auto_tutorials/plot_artifacts_correction_ssp.rst
auto_tutorials/plot_artifacts_correction_ica.rst
auto_tutorials/plot_artifacts_correction_maxwell_filtering.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/preprocessing/plot_define_target_events.rst
auto_examples/preprocessing/plot_eog_artifact_histogram.rst
auto_examples/preprocessing/plot_find_ecg_artifacts.rst
auto_examples/preprocessing/plot_find_eog_artifacts.rst
auto_examples/preprocessing/plot_head_positions.rst
auto_examples/preprocessing/plot_ica_comparison.rst
auto_examples/preprocessing/plot_interpolate_bad_channels.rst
auto_examples/preprocessing/plot_movement_compensation.rst
auto_examples/preprocessing/plot_rereference_eeg.rst
auto_examples/preprocessing/plot_resample.rst
auto_examples/preprocessing/plot_run_ica.rst
auto_examples/preprocessing/plot_shift_evoked.rst
auto_examples/preprocessing/plot_virtual_evoked.rst
auto_examples/preprocessing/plot_xdawn_denoising.rst
.. toctree::
:maxdepth: 1
auto_tutorials/plot_visualize_raw.rst
auto_tutorials/plot_visualize_epochs.rst
auto_tutorials/plot_visualize_evoked.rst
auto_tutorials/plot_visualize_stc.rst
auto_tutorials/plot_whitened.rst
tutorials/report.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/visualization/make_report.rst
auto_examples/visualization/plot_3d_to_2d.rst
auto_examples/visualization/plot_channel_epochs_image.rst
auto_examples/visualization/plot_eeg_on_scalp.rst
auto_examples/visualization/plot_evoked_topomap.rst
auto_examples/visualization/plot_evoked_whitening.rst
auto_examples/visualization/plot_meg_sensors.rst
auto_examples/visualization/plot_parcellation.rst
auto_examples/visualization/plot_sensor_noise_level.rst
auto_examples/visualization/plot_ssp_projs_sensitivity_map.rst
auto_examples/visualization/plot_topo_compare_conditions.rst
auto_examples/visualization/plot_topo_customized.rst
auto_examples/visualization/plot_xhemi.rst
Tutorials
.. toctree::
:maxdepth: 1
auto_tutorials/plot_introduction.rst
auto_tutorials/plot_epoching_and_averaging.rst
auto_tutorials/plot_eeg_erp.rst
auto_tutorials/plot_sensors_time_frequency.rst
manual/time_frequency.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/time_frequency/plot_compute_raw_data_spectrum.rst
auto_examples/time_frequency/plot_compute_source_psd_epochs.rst
auto_examples/time_frequency/plot_source_label_time_frequency.rst
auto_examples/time_frequency/plot_source_power_spectrum.rst
auto_examples/time_frequency/plot_source_space_time_frequency.rst
auto_examples/time_frequency/plot_temporal_whitening.rst
auto_examples/time_frequency/plot_time_frequency_global_field_power.rst
auto_examples/time_frequency/plot_time_frequency_simulated.rst
auto_examples/time_frequency/plot_compute_csd.rst
Background
.. toctree::
:maxdepth: 1
auto_tutorials/plot_background_freesurfer.rst
manual/source_localization/forward.rst
manual/source_localization/inverse.rst
auto_tutorials/plot_morph_stc.rst
Getting data to source space
.. toctree::
:maxdepth: 1
auto_tutorials/plot_source_alignment.rst
auto_tutorials/plot_forward.rst
auto_tutorials/plot_compute_covariance.rst
auto_tutorials/plot_mne_dspm_source_localization.rst
auto_tutorials/plot_mne_solutions.rst
auto_tutorials/plot_dipole_fit.rst
auto_tutorials/plot_point_spread.rst
auto_tutorials/plot_dipole_orientations.rst
auto_tutorials/plot_dics.rst
auto_tutorials/plot_background_freesurfer.rst
Forward examples
.. toctree::
:maxdepth: 1
auto_examples/forward/plot_decimate_head_surface.rst
auto_examples/forward/plot_forward_sensitivity_maps.rst
auto_examples/forward/plot_left_cerebellum_volume_source.rst
auto_examples/forward/plot_source_space_morphing.rst
Inverse examples
.. toctree::
:maxdepth: 1
auto_examples/datasets/plot_opm_rest_data.rst
auto_examples/inverse/plot_compute_mne_inverse_epochs_in_label.rst
auto_examples/inverse/plot_compute_mne_inverse_raw_in_label.rst
auto_examples/inverse/plot_compute_mne_inverse_volume.rst
auto_examples/inverse/plot_covariance_whitening_dspm.rst
auto_examples/inverse/plot_custom_inverse_solver.rst
auto_examples/inverse/plot_dics_source_power.rst
auto_examples/inverse/plot_gamma_map_inverse.rst
auto_examples/inverse/plot_label_activation_from_stc.rst
auto_examples/inverse/plot_label_from_stc.rst
auto_examples/inverse/plot_label_source_activations.rst
auto_examples/inverse/plot_lcmv_beamformer.rst
auto_examples/inverse/plot_lcmv_beamformer_volume.rst
auto_examples/inverse/plot_mixed_source_space_inverse.rst
auto_examples/inverse/plot_mixed_norm_inverse.rst
auto_examples/inverse/plot_mne_crosstalk_function.rst
auto_examples/inverse/plot_mne_point_spread_function.rst
auto_examples/inverse/plot_morph_surface_stc.rst
auto_examples/inverse/plot_morph_volume_stc.rst
auto_examples/inverse/plot_rap_music.rst
auto_examples/inverse/plot_read_stc.rst
auto_examples/inverse/plot_read_inverse.rst
auto_examples/inverse/plot_read_source_space.rst
auto_examples/inverse/plot_snr_estimate.rst
auto_examples/inverse/plot_tf_dics.rst
auto_examples/inverse/plot_tf_lcmv.rst
auto_examples/inverse/plot_time_frequency_mixed_norm_inverse.rst
auto_examples/inverse/plot_vector_mne_solution.rst
Simulation examples
.. toctree::
:maxdepth: 1
auto_examples/simulation/plot_simulate_evoked_data.rst
auto_examples/simulation/plot_simulate_raw_data.rst
Background
.. toctree::
:maxdepth: 1
auto_tutorials/plot_background_statistics.rst
Sensor Space
.. toctree::
:maxdepth: 1
auto_tutorials/plot_stats_spatio_temporal_cluster_sensors.rst
auto_tutorials/plot_stats_cluster_1samp_test_time_frequency.rst
auto_tutorials/plot_stats_cluster_time_frequency.rst
auto_tutorials/plot_stats_cluster_erp.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/stats/plot_fdr_stats_evoked.rst
auto_examples/stats/plot_cluster_stats_evoked.rst
auto_examples/stats/plot_sensor_permutation_test.rst
auto_examples/stats/plot_sensor_regression.rst
auto_examples/stats/plot_linear_regression_raw.rst
Source Space
.. toctree::
:maxdepth: 1
auto_tutorials/plot_stats_cluster_time_frequency_repeated_measures_anova.rst
auto_tutorials/plot_stats_cluster_spatio_temporal_2samp.rst
auto_tutorials/plot_stats_cluster_spatio_temporal_repeated_measures_anova.rst
auto_tutorials/plot_stats_cluster_spatio_temporal.rst
Decoding
.. toctree::
:maxdepth: 1
auto_tutorials/plot_sensors_decoding.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/decoding/decoding_rsa.rst
auto_examples/decoding/plot_decoding_csp_eeg.rst
auto_examples/decoding/plot_decoding_csp_timefreq.rst
auto_examples/decoding/plot_decoding_spatio_temporal_source.rst
auto_examples/decoding/plot_decoding_spoc_CMC.rst
auto_examples/decoding/plot_decoding_time_generalization_conditions.rst
auto_examples/decoding/plot_decoding_unsupervised_spatial_filter.rst
auto_examples/decoding/plot_decoding_xdawn_eeg.rst
auto_examples/decoding/plot_ems_filtering.rst
auto_examples/decoding/plot_linear_model_patterns.rst
Encoding
.. toctree::
:maxdepth: 1
auto_tutorials/plot_receptive_field.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/decoding/plot_receptive_field_mtrf.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/connectivity/plot_cwt_sensor_connectivity.rst
auto_examples/connectivity/plot_mixed_source_space_connectivity.rst
auto_examples/connectivity/plot_mne_inverse_coherence_epochs.rst
auto_examples/connectivity/plot_mne_inverse_connectivity_spectrum.rst
auto_examples/connectivity/plot_mne_inverse_label_connectivity.rst
auto_examples/connectivity/plot_mne_inverse_psi_visual.rst
auto_examples/connectivity/plot_sensor_connectivity.rst
Examples
.. toctree::
:maxdepth: 1
auto_examples/realtime/ftclient_rt_average.rst
auto_examples/realtime/ftclient_rt_compute_psd.rst
auto_examples/realtime/plot_compute_rt_average.rst
auto_examples/realtime/plot_compute_rt_decoder.rst
auto_examples/realtime/rt_feedback_client.rst
auto_examples/realtime/rt_feedback_server.rst
MNE-C
.. toctree::
:maxdepth: 1
tutorials/command_line.rst
manual/c_reference.rst
manual/gui/analyze.rst
manual/gui/browse.rst
manual/appendix/bem_model.rst
manual/appendix/c_misc.rst
manual/appendix/c_release_notes.rst
manual/appendix/c_EULA.rst
manual/appendix/martinos.rst
MNE-MATLAB
.. toctree::
:maxdepth: 1
manual/matlab.rst
.. toctree::
:maxdepth: 1
contributing.rst
configure_git.rst
customizing_git.rst