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Commits on Jan 16, 2019

• test

  youchihwang

  committed
  c71607f

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Commits on Apr 10, 2018

• Merge remote-tracking branch 'origin/master'

  lh3

  committed
  f090f93

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Commits on Apr 7, 2018

• Merge pull request lh3#190 from ihaque-freenome/bwa-postalt-fix

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  lh3

  authored
  e624290

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• Exclude empty SAM lines in bounds check for ALT postprocessor

  ihaque-freenome

  committed
  27dd1da

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Commits on Apr 2, 2018

• Merge branch 'dev' into XB

  lh3

  committed
  11d53b0

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• optionally write XB to include alignment score

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  lh3

  committed
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Commits on Nov 7, 2017

• emphasize pacbio and nanopore

  lh3

  committed
  fde1fd7

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• wording changes

  lh3

  committed
  eef0427

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• fixed a typo in link

  lh3

  committed
  1a2b0c0

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• formatting change

  lh3

  committed
  824e00e

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• claim bwa-mem long-read mode deprecated

  lh3

  committed
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Commits on Oct 23, 2017

• Released bwa-0.7.17 (r1188)

  lh3

  committed
  9f26bfc

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Commits on Sep 26, 2017

• r1187: a typo in command line help

  lh3

  committed
  b582816

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Commits on Sep 11, 2017

• r1185: don't lower supp mapq with -5

  lh3

  committed
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Commits on Jul 31, 2017

• r1181: fixed a segfault (lh3#145) due to (lh3#138)

  lh3

  committed
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• Release 0.7.16-r1180

  lh3

  committed
  47d9fb2

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Commits on Jul 30, 2017

• Merge pull request lh3#129 from lexentbio/bwakit_fix_sort

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  lh3

  authored
  5d15c8b

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• Merge pull request lh3#138 from nh13/nh_mem_mate_cigar

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  lh3

  authored
  950ea8c

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• Merge pull request lh3#60 from jdagilliland/typo

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  lh3

  authored
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• Merge pull request lh3#84 from jblachly/readgroupfix

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  lh3

  authored
  1eee77a

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• removed drone.io

  lh3

  committed
  24a8d66

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• moved BWTFree() into BWTIncFree()

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  lh3

  committed
  89a5c0c

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• Merge pull request lh3#139 from jmarshall/fixes

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  lh3

  authored
  0976272

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• Merge pull request lh3#70 from rmzelle/patch-1

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  lh3

  authored
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• Merge pull request lh3#96 from jpfeil/master

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  lh3

  authored
  31bf49d

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• Merge pull request lh3#123 from bwlang/patch-1

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  lh3

  authored
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• Merge pull request lh3#141 from jmarshall/bwasw-nan

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  lh3

  authored
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Commits on Jul 4, 2017

• Several trivial Debian patches

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  tillea

  authored and

  jmarshall

  committed
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Commits on Jul 3, 2017

• Mem should set the mate cigar tag.

  nh13

  committed
  3b96dce

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• In bsw2_stat(), fail to infer when no pairs are within boundaries

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  jmarshall

  committed
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Commits on Jun 30, 2017

• Copy the whole kstring_t even if it contains NULs

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  jmarshall

  committed
  6906498

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Commits on Jun 29, 2017

• Expand tot_seqs variable to long long

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  jmarshall

  committed
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Commits on Jun 28, 2017

• Update README.md

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  rmzelle

  authored and

  jmarshall

  committed
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Commits on Jun 27, 2017

• Add "bwa mem -o FILE" synonym and documentation

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  jmarshall

  committed
  bc58bf2

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• Added option to write output to file

  

  José Manuel Abuín Mosquera

  authored and

  jmarshall

  committed
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