为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A curated list of resources for using LLMs to develop more competitive grant applications.

Python library to facilitate genome assembly, annotation, and comparative genomics

Gene Set Enrichment Analysis in Python

Fast genome-wide functional annotation through orthology assignment

Bioinformatics code libraries and scripts

Bioinformatics data analysis and visualization toolkit

RNA-seq workflow using STAR and DESeq2

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

Python package with helper tools for the nf-core community.

This Snakemake pipeline implements the GATK best-practices workflow

Earl Grey: A fully automated TE curation and annotation pipeline

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

Python programs for processing GFF3 files

PASTA (Practical Alignment using SATe and Transitivity)

Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.

Calculate summary statistics and manipulate multiple sequence alignments

Long-reads Gap-free Chromosome-scale Assembler

Detecting multi-genome synteny using minimizer graph mapping

Algorithm For Gene Order Reconstruction in Ancestors

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.

Segmental Duplication Assembler (SDA).

A reference-assisted assembly tool for producing draft chromosome sequences.