Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

Reference-free profiling of polyploid genomes

Generating iToL annotations from Spreadsheet or CSV files

RepeatIdentifier

an R/Shiny application for interactive creation of non-circular plots of whole genomes

R package for WebGestalt

An R Package for Bayesian Nonparametric Clustering. We plan to implement several models.

R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency

Custom code for 3,000 rice genomes paper

analysis of whole genome duplications (WGD) and triplications (WGT) using comparative gene count data

find terminal inverted repeats (TIRs)

COverage VIsualization for Subgenomes (covisr)