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setup.py
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setup.py
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#usr/bin/env python
import os
import platform
import sys
###########################################################################
# Check Python's version info and exit early if it is too old
if sys.version_info < (2, 7):
print("This module requires Python >= 2.7")
sys.exit(0)
# Check whether we are compiling for PyPy. Headers will not be installed
# for PyPy.
SKIP_HEADER_INSTALL = (platform.python_implementation() == "PyPy") or (
"SKIP_HEADER_INSTALL" in os.environ
)
###########################################################################
from setuptools import setup, Command, Extension
import distutils.ccompiler
import glob
import shutil
import subprocess
import sys
from select import select
###########################################################################
LIBIGRAPH_FALLBACK_INCLUDE_DIRS = ["/usr/include/igraph", "/usr/local/include/igraph"]
LIBIGRAPH_FALLBACK_LIBRARIES = ["igraph"]
LIBIGRAPH_FALLBACK_LIBRARY_DIRS = []
###########################################################################
def create_dir_unless_exists(*args):
"""Creates a directory unless it exists already."""
path = os.path.join(*args)
if not os.path.isdir(path):
os.makedirs(path)
def ensure_dir_does_not_exist(*args):
"""Ensures that the given directory does not exist."""
path = os.path.join(*args)
if os.path.isdir(path):
shutil.rmtree(path)
def exclude_from_list(items, items_to_exclude):
"""Excludes certain items from a list, keeping the original order of
the remaining items."""
itemset = set(items_to_exclude)
return [item for item in items if item not in itemset]
def find_static_library(library_name, library_path):
"""Given the raw name of a library in `library_name`, tries to find a
static library with this name in the given `library_path`. `library_path`
is automatically extended with common library directories on Linux and Mac
OS X."""
variants = ["lib{0}.a", "{0}.a", "{0}.lib", "lib{0}.lib"]
if is_unix_like():
extra_libdirs = [
"/usr/local/lib64",
"/usr/local/lib",
"/usr/lib64",
"/usr/lib",
"/lib64",
"/lib",
]
else:
extra_libdirs = []
for path in extra_libdirs:
if path not in library_path and os.path.isdir(path):
library_path.append(path)
for path in library_path:
for variant in variants:
full_path = os.path.join(path, variant.format(library_name))
if os.path.isfile(full_path):
return full_path
def first(iterable):
"""Returns the first element from the given iterable."""
for item in iterable:
return item
raise ValueError("iterable is empty")
def get_output(args, encoding="utf-8"):
"""Returns the output of a command returning a single line of output."""
PIPE = subprocess.PIPE
try:
p = subprocess.Popen(args, shell=False, stdin=PIPE, stdout=PIPE, stderr=PIPE)
stdout, stderr = p.communicate()
returncode = p.returncode
except OSError:
stdout, stderr = None, None
returncode = 77
if encoding and type(stdout).__name__ == "bytes":
stdout = str(stdout, encoding=encoding)
if encoding and type(stderr).__name__ == "bytes":
stderr = str(stderr, encoding=encoding)
return stdout, returncode
def get_output_single_line(args, encoding="utf-8"):
"""Returns the output of a command returning a single line of output,
stripped from any trailing newlines."""
stdout, returncode = get_output(args, encoding=encoding)
if stdout is not None:
line, _, _ = stdout.partition("\n")
else:
line = None
return line, returncode
def is_unix_like(platform=None):
"""Returns whether the given platform is a Unix-like platform with the usual
Unix filesystem. When the parameter is omitted, it defaults to ``sys.platform``
"""
platform = platform or sys.platform
platform = platform.lower()
return (
platform.startswith("linux")
or platform.startswith("darwin")
or platform.startswith("cygwin")
)
def find_msvc_source_folder(folder = ".", requires_built=False):
"""Finds the folder that contains the MSVC-specific source of igraph if there
is any. Returns `None` if no such folder is found. Prints a warning if the
choice is ambiguous.
"""
all_msvc_dirs = glob.glob(os.path.join(folder, "igraph-*-msvc"))
if len(all_msvc_dirs) > 0:
if len(all_msvc_dirs) > 1:
print(
"More than one MSVC build directory (..\\..\\igraph-*-msvc) found!"
)
print(
"It could happen that setup.py uses the wrong one! Please remove all but the right one!\n\n"
)
msvc_builddir = all_msvc_dirs[-1]
if requires_built and not os.path.exists(os.path.join(msvc_builddir, "Release")):
print(
"There is no 'Release' dir in the MSVC build directory\n(%s)"
% msvc_builddir
)
print("Please build the MSVC build first!\n")
return None
return msvc_builddir
else:
return None
def preprocess_fallback_config():
"""Preprocesses the fallback include and library paths depending on the
platform."""
global LIBIGRAPH_FALLBACK_INCLUDE_DIRS
global LIBIGRAPH_FALLBACK_LIBRARY_DIRS
global LIBIGRAPH_FALLBACK_LIBRARIES
if platform.system() == "Windows" and distutils.ccompiler.get_default_compiler() == "msvc":
# if this setup is run in the source checkout *and* the igraph msvc was build,
# this code adds the right library and include dir
msvc_builddir = find_msvc_source_folder(os.path.join("..", ".."), requires_built=True)
if msvc_builddir is not None:
print("Using MSVC build dir: %s\n\n" % msvc_builddir)
LIBIGRAPH_FALLBACK_INCLUDE_DIRS = [
os.path.join(msvc_builddir, "include")
]
LIBIGRAPH_FALLBACK_LIBRARY_DIRS = [
os.path.join(msvc_builddir, "Release")
]
return True
else:
return False
else:
return True
def quote_path_for_shell(s):
# On MinGW / MSYS, we need to use forward slash style and remove unsafe
# characters in order not to trip up the configure script
if "MSYSTEM" in os.environ:
s = s.replace("\\", "/")
if s[1:3] == ":/":
s = "/" + s[0] + s[2:]
# Now the proper quoting
return "'" + s.replace("'", "'\\''") + "'"
def wait_for_keypress(seconds):
"""Wait for a keypress or until the given number of seconds have passed,
whichever happens first.
"""
is_windows = platform.system() == "windows"
while seconds > 0:
if seconds > 1:
plural = "s"
else:
plural = ""
sys.stdout.write(
"\rContinuing in %2d second%s; press Enter to continue "
"immediately. " % (seconds, plural)
)
sys.stdout.flush()
if is_windows:
from msvcrt import kbhit
for i in range(10):
if kbhit():
seconds = 0
break
sleep(0.1)
else:
rlist, _, _ = select([sys.stdin], [], [], 1)
if rlist:
sys.stdin.readline()
seconds = 0
break
seconds -= 1
sys.stdout.write("\r" + " " * 65 + "\r")
###########################################################################
class IgraphCCoreBuilder(object):
"""Class responsible for downloading and building the C core of igraph
if it is not installed yet."""
def compile_in(self, build_folder, source_folder=None):
"""Compiles igraph from its source code in the given folder.
source_folder is the name of the folder that contains igraph's source
files. If it is `None`, it is assumed that it is the same as the
build folder.
"""
if source_folder is None:
source_folder = build_folder
source_folder = os.path.abspath(source_folder)
build_folder = os.path.abspath(build_folder)
cwd = os.getcwd()
try:
os.chdir(source_folder)
# Run the bootstrap script if we have downloaded a tarball from
# Github
if os.path.isfile("bootstrap.sh") and not os.path.isfile("configure"):
print("Bootstrapping igraph...")
retcode = subprocess.call("sh bootstrap.sh", shell=True)
if retcode:
return False
# Patch ltmain.sh so it does not freak out when the build directory
# contains spaces
with open("ltmain.sh") as infp:
with open("ltmain.sh.new", "w") as outfp:
for line in infp:
if line.endswith("cd $darwin_orig_dir\n"):
line = line.replace(
"cd $darwin_orig_dir\n", 'cd "$darwin_orig_dir"\n'
)
outfp.write(line)
shutil.move("ltmain.sh.new", "ltmain.sh")
create_dir_unless_exists(build_folder)
os.chdir(build_folder)
print("Configuring igraph...")
configure_args = ["--disable-tls"]
if "IGRAPH_EXTRA_CONFIGURE_ARGS" in os.environ:
configure_args.extend(os.environ["IGRAPH_EXTRA_CONFIGURE_ARGS"].split(" "))
retcode = subprocess.call(
"sh {0} {1}".format(
quote_path_for_shell(os.path.join(source_folder, "configure")),
" ".join(configure_args)
),
env=self.enhanced_env(CFLAGS="-fPIC", CXXFLAGS="-fPIC"),
shell=True
)
if retcode:
return False
building_on_windows = platform.system() == "Windows"
if building_on_windows:
print("Creating Microsoft Visual Studio project...")
retcode = subprocess.call("make msvc", shell=True)
if retcode:
return False
print("Building igraph...")
if building_on_windows:
msvc_source = find_msvc_source_folder()
if not msvc_source:
return False
devenv = os.environ.get("DEVENV_EXECUTABLE")
os.chdir(msvc_source)
if devenv is None:
retcode = subprocess.call("devenv /upgrade igraph.vcproj", shell=True)
else:
retcode = subprocess.call([devenv, "/upgrade", "igraph.vcproj"])
if retcode:
return False
retcode = subprocess.call("msbuild.exe igraph.vcxproj /p:configuration=Release")
else:
retcode = subprocess.call("make", shell=True)
if retcode:
return False
if building_on_windows:
libraries = ["igraph"]
else:
libraries = []
for line in open("igraph.pc"):
if line.startswith("Libs: ") or line.startswith("Libs.private: "):
words = line.strip().split()
libraries.extend(
word[2:] for word in words if word.startswith("-l")
)
if not libraries:
# Educated guess
libraries = ["igraph"]
return libraries
finally:
os.chdir(cwd)
def copy_build_artifacts(
self, source_folder, build_folder, install_folder, libraries
):
building_on_windows = platform.system() == "Windows"
create_dir_unless_exists(install_folder)
ensure_dir_does_not_exist(install_folder, "include")
ensure_dir_does_not_exist(install_folder, "lib")
shutil.copytree(
os.path.join(source_folder, "include"),
os.path.join(install_folder, "include"),
)
create_dir_unless_exists(install_folder, "lib")
for fname in glob.glob(os.path.join(build_folder, "include", "*.h")):
shutil.copy(fname, os.path.join(install_folder, "include"))
if building_on_windows:
msvc_builddir = find_msvc_source_folder(build_folder, requires_built=True)
if msvc_builddir is not None:
print("Using MSVC build dir: %s\n\n" % msvc_builddir)
for fname in glob.glob(
os.path.join(msvc_builddir, "Release", "*.lib")
):
shutil.copy(fname, os.path.join(install_folder, "lib"))
else:
print("Cannot find MSVC build dir in %s\n\n" % build_folder)
return False
else:
for fname in glob.glob(
os.path.join(build_folder, "src", ".libs", "libigraph.*")
):
shutil.copy(fname, os.path.join(install_folder, "lib"))
with open(os.path.join(install_folder, "build.cfg"), "w") as f:
f.write(repr(libraries))
return True
@staticmethod
def enhanced_env(**kwargs):
env = os.environ.copy()
for k, v in kwargs.items():
prev = os.environ.get(k)
env[k] = "{0} {1}".format(prev, v) if prev else v
return env
class BuildConfiguration(object):
def __init__(self):
self.include_dirs = []
self.library_dirs = []
self.runtime_library_dirs = []
self.libraries = []
self.extra_compile_args = []
self.extra_link_args = []
self.define_macros = []
self.extra_objects = []
self.static_extension = False
self.use_pkgconfig = False
self._has_pkgconfig = None
self.excluded_include_dirs = []
self.excluded_library_dirs = []
self.wait = platform.system() != "Windows"
@property
def has_pkgconfig(self):
"""Returns whether ``pkg-config`` is available on the current system
and it knows about igraph or not."""
if self._has_pkgconfig is None:
if self.use_pkgconfig:
line, exit_code = get_output_single_line(["pkg-config", "igraph"])
self._has_pkgconfig = exit_code == 0
else:
self._has_pkgconfig = False
return self._has_pkgconfig
@property
def build_c_core(self):
"""Returns a class representing a custom setup.py command that builds
the C core of igraph.
This is used in CI environments where we want to build the C core of
igraph once and then build the Python interface for various Python
versions without having to recompile the C core all the time.
If is also used as a custom building block of `build_ext`.
"""
buildcfg = self
class build_c_core(Command):
description = "Compile the C core of igraph only"
user_options = []
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
buildcfg.c_core_built = buildcfg.compile_igraph_from_vendor_source()
return build_c_core
@property
def build_ext(self):
"""Returns a class that can be used as a replacement for the
``build_ext`` command in ``setuptools`` and that will compile the C core
of igraph before compiling the Python extension.
"""
from setuptools.command.build_ext import build_ext
from distutils.sysconfig import get_python_inc
buildcfg = self
class custom_build_ext(build_ext):
def run(self):
# Bail out if we don't have the Python include files
include_dir = get_python_inc()
if not os.path.isfile(os.path.join(include_dir, "Python.h")):
print("You will need the Python headers to compile this extension.")
sys.exit(1)
# Check whether the user asked us to discover a pre-built igraph
# with pkg-config
if buildcfg.use_pkgconfig:
detected = buildcfg.detect_from_pkgconfig()
if not detected:
print("Cannot find the C core of igraph on this system using pkg-config.")
sys.exit(1)
else:
# Build the C core from the vendored igraph source
self.run_command("build_c_core")
if not buildcfg.c_core_built:
# Fall back to an educated guess if everything else failed
if not detected:
buildcfg.use_educated_guess()
# Add any extra library paths if needed; this is needed for the
# Appveyor CI build
if "IGRAPH_EXTRA_LIBRARY_PATH" in os.environ:
buildcfg.library_dirs = list(
os.environ["IGRAPH_EXTRA_LIBRARY_PATH"].split(os.pathsep)
) + buildcfg.library_dirs
# Replaces library names with full paths to static libraries
# where possible. libm.a is excluded because it caused problems
# on Sabayon Linux where libm.a is probably not compiled with
# -fPIC
if buildcfg.static_extension:
if buildcfg.static_extension == "only_igraph":
buildcfg.replace_static_libraries(only=["igraph"])
else:
buildcfg.replace_static_libraries(exclusions=["m"])
# Prints basic build information
buildcfg.print_build_info()
# Find the igraph extension and configure it with the settings
# of this build configuration
ext = first(
extension
for extension in self.extensions
if extension.name == "louvain._c_louvain"
)
buildcfg.configure(ext)
# Run the original build_ext command
build_ext.run(self)
return custom_build_ext
@property
def sdist(self):
"""Returns a class that can be used as a replacement for the
``sdist`` command in ``setuptools`` and that will clean up
``vendor/source/igraph`` before running the original ``sdist``
command.
"""
from setuptools.command.sdist import sdist
from distutils.sysconfig import get_python_inc
buildcfg = self
class custom_sdist(sdist):
def run(self):
# Clean up vendor/source/igraph with git
cwd = os.getcwd()
try:
os.chdir(os.path.join("vendor", "source", "igraph"))
if os.path.exists(".git"):
retcode = subprocess.call("git clean -dfx", shell=True)
if retcode:
print("Failed to clean vendor/source/igraph with git")
print("")
return False
finally:
os.chdir(cwd)
# Run the original sdist command
sdist.run(self)
return custom_sdist
def compile_igraph_from_vendor_source(self):
"""Compiles igraph from the vendored source code inside `vendor/igraph/source`.
This folder typically comes from a git submodule.
"""
if os.path.exists(os.path.join("vendor", "install", "igraph")):
# Vendored igraph already compiled and installed, just use it
self.use_vendored_igraph()
return True
vendor_source_path = os.path.join("vendor", "source", "igraph")
if not os.path.isfile(os.path.join(vendor_source_path, "configure.ac")):
# No git submodule present with vendored source
print("Cannot find vendored igraph source in " + vendor_source_path)
print("")
return False
source_folder = os.path.join("vendor", "source", "igraph")
build_folder = os.path.join("vendor", "build", "igraph")
install_folder = os.path.join("vendor", "install", "igraph")
print("We are going to build the C core of igraph.")
print(" Source folder: %s" % source_folder)
print(" Build folder: %s" % build_folder)
print(" Install folder: %s" % install_folder)
print("")
igraph_builder = IgraphCCoreBuilder()
libraries = igraph_builder.compile_in(build_folder, source_folder=source_folder)
if not libraries or not igraph_builder.copy_build_artifacts(
source_folder=source_folder,
build_folder=build_folder,
install_folder=install_folder,
libraries=libraries,
):
print("Could not compile the C core of igraph.")
print("")
sys.exit(1)
self.use_vendored_igraph()
return True
def configure(self, ext):
"""Configures the given Extension object using this build configuration."""
ext.include_dirs = exclude_from_list(
ext.include_dirs + self.include_dirs, self.excluded_include_dirs
)
print('ext.include_dirs: {}'.format(ext.include_dirs))
ext.library_dirs = exclude_from_list(
self.library_dirs, self.excluded_library_dirs
)
ext.runtime_library_dirs = self.runtime_library_dirs
ext.libraries = self.libraries
ext.extra_compile_args = self.extra_compile_args
ext.extra_link_args = self.extra_link_args
ext.extra_objects = self.extra_objects
ext.define_macros = self.define_macros
def detect_from_pkgconfig(self):
"""Detects the igraph include directory, library directory and the
list of libraries to link to using ``pkg-config``."""
if not buildcfg.has_pkgconfig:
return False
cmd = ["pkg-config", "igraph", "--cflags", "--libs"]
if self.static_extension:
cmd += ["--static"]
line, exit_code = get_output_single_line(cmd)
if exit_code > 0 or len(line) == 0:
return False
opts = line.strip().split()
self.libraries = [opt[2:] for opt in opts if opt.startswith("-l")]
self.library_dirs = [opt[2:] for opt in opts if opt.startswith("-L")]
self.include_dirs = [opt[2:] for opt in opts if opt.startswith("-I")]
return True
def print_build_info(self):
"""Prints the include and library path being used for debugging purposes."""
if self.static_extension == "only_igraph":
build_type = "dynamic extension with vendored igraph source"
elif self.static_extension:
build_type = "static extension"
else:
build_type = "dynamic extension"
print("Build type: %s" % build_type)
print("Include path: %s" % " ".join(self.include_dirs))
if self.excluded_include_dirs:
print(" - excluding: %s" % " ".join(self.excluded_include_dirs))
print("Library path: %s" % " ".join(self.library_dirs))
if self.excluded_library_dirs:
print(" - excluding: %s" % " ".join(self.excluded_library_dirs))
print("Runtime library path: %s" % " ".join(self.runtime_library_dirs))
print("Linked dynamic libraries: %s" % " ".join(self.libraries))
print("Linked static libraries: %s" % " ".join(self.extra_objects))
print("Extra compiler options: %s" % " ".join(self.extra_compile_args))
print("Extra linker options: %s" % " ".join(self.extra_link_args))
def process_args_from_command_line(self):
"""Preprocesses the command line options before they are passed to
setup.py and sets up the build configuration."""
# Yes, this is ugly, but we don't want to interfere with setup.py's own
# option handling
opts_to_remove = []
for idx, option in enumerate(sys.argv):
if not option.startswith("--"):
continue
if option == "--static":
opts_to_remove.append(idx)
self.static_extension = True
elif option == "--no-pkg-config":
opts_to_remove.append(idx)
self.use_pkgconfig = False
elif option == "--no-wait":
opts_to_remove.append(idx)
self.wait = False
elif option == "--use-pkg-config":
opts_to_remove.append(idx)
self.use_pkgconfig = True
for idx in reversed(opts_to_remove):
sys.argv[idx : (idx + 1)] = []
def replace_static_libraries(self, only=None, exclusions=None):
"""Replaces references to libraries with full paths to their static
versions if the static version is to be found on the library path."""
building_on_windows = platform.system() == "Windows"
if not building_on_windows and "stdc++" not in self.libraries:
self.libraries.append("stdc++")
if exclusions is None:
exclusions = []
for library_name in set(self.libraries) - set(exclusions):
if only is not None and library_name not in only:
continue
static_lib = find_static_library(library_name, self.library_dirs)
if static_lib:
self.libraries.remove(library_name)
self.extra_objects.append(static_lib)
def use_vendored_igraph(self):
"""Assumes that igraph is installed already in ``vendor/install/igraph`` and sets up
the include and library paths and the library names accordingly."""
building_on_windows = platform.system() == "Windows"
buildcfg.include_dirs = [os.path.join("vendor", "install", "igraph", "include")]
buildcfg.library_dirs = [os.path.join("vendor", "install", "igraph", "lib")]
if not buildcfg.static_extension:
buildcfg.static_extension = "only_igraph"
if building_on_windows:
buildcfg.define_macros.append(("IGRAPH_STATIC", "1"))
buildcfg_file = os.path.join("vendor", "install", "igraph", "build.cfg")
if os.path.exists(buildcfg_file):
buildcfg.libraries = eval(open(buildcfg_file).read())
def use_educated_guess(self):
"""Tries to guess the proper library names, include and library paths
if everything else failed."""
preprocess_fallback_config()
global LIBIGRAPH_FALLBACK_LIBRARIES
global LIBIGRAPH_FALLBACK_INCLUDE_DIRS
global LIBIGRAPH_FALLBACK_LIBRARY_DIRS
print("WARNING: we were not able to detect where igraph is installed on")
print("your machine (if it is installed at all). We will use the fallback")
print("library and include paths hardcoded in setup.py and hope that the")
print("C core of igraph is installed there.")
print("")
print("If the compilation fails and you are sure that igraph is installed")
print("on your machine, adjust the following two variables in setup.py")
print("accordingly and try again:")
print("")
print("- LIBIGRAPH_FALLBACK_INCLUDE_DIRS")
print("- LIBIGRAPH_FALLBACK_LIBRARY_DIRS")
print("")
if self.wait:
wait_for_keypress(seconds=10)
self.libraries = LIBIGRAPH_FALLBACK_LIBRARIES[:]
if self.static_extension:
self.libraries.extend(["xml2", "z", "m", "stdc++"])
self.include_dirs = LIBIGRAPH_FALLBACK_INCLUDE_DIRS[:]
self.library_dirs = LIBIGRAPH_FALLBACK_LIBRARY_DIRS[:]
###########################################################################
# Process command line options
buildcfg = BuildConfiguration()
buildcfg.process_args_from_command_line()
# Define the extension
louvain_ext = Extension('louvain._c_louvain',
sources = glob.glob(os.path.join('src', '*.cpp')),
include_dirs=['include']);
options = dict(
name = 'louvain',
description = 'louvain is a general algorithm for methods of community detection in large networks.',
long_description=
"""
louvain is a general algorithm for methods of community detection in large networks.
Please refer to the `documentation <http://louvain.readthedocs.io/en/latest>`_
for more details.
The source code of this package is hosted at `GitHub <https://github.com/vtraag/louvain>`_.
Issues and bug reports are welcome at https://github.com/vtraag/louvain/issues.
""",
license = 'GPLv3+',
url = 'https://github.com/vtraag/louvain',
use_scm_version=True,
setup_requires=['setuptools_scm'],
author = 'V.A. Traag',
author_email = '[email protected]',
test_suite = 'tests',
provides = ['louvain'],
package_dir = {'louvain': 'src'},
packages = ['louvain'],
ext_modules = [louvain_ext],
install_requires = ['python-igraph >= 0.8.0'],
platforms="ALL",
keywords=[
'graph',
'network',
'community detection',
'clustering'
],
classifiers=[
'Development Status :: 4 - Beta',
'Environment :: Console',
'Intended Audience :: End Users/Desktop',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Programming Language :: Python',
'Programming Language :: C++',
'Topic :: Scientific/Engineering :: Mathematics',
'Topic :: Scientific/Engineering :: Information Analysis',
'Topic :: Sociology'
],
cmdclass={
"build_c_core": buildcfg.build_c_core, # used by CI
"build_ext": buildcfg.build_ext,
"sdist": buildcfg.sdist
},
)
if sys.version_info > (3, 0):
options["use_2to3"] = True
setup(**options)