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Commits on Sep 4, 2024

• update

  

  Zhemin Zhou

  committed
  f070664

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Commits on Aug 31, 2023

• :wMerge branch 'master' of https://github.com/zheminzhou/EToKi

  

  Zhemin Zhou

  committed
  08d7382

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• bug fixing

  

  Zhemin Zhou

  committed
  fec43d8

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• Update assemble.py

  zheminzhou

  authored
  b2dce1a

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• add iqtree

  

  Zhemin Zhou

  committed
  65ef275

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Commits on Aug 29, 2023

• local update

  

  Zhemin Zhou

  committed
  149534b

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• local updates

  

  Zhemin Zhou

  committed
  08ae346

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• local updates

  

  Zhemin Zhou

  committed
  8c1696f

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Commits on Apr 13, 2023

• Merge pull request #17 from NigelDyer/Warwick

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  zheminzhou

  authored
  49ef6b9

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• Remove single ended reads file in prepare stage if it contains no reads

  NigelDyer

  committed
  18206e0

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Commits on Mar 18, 2023

• Cater for (rare) situation when there are no sufficiently long contigs in the assembly

  NigelDyer

  committed
  cbac0d3

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Commits on Mar 15, 2023

• Improved use of Hapog output for polishing

  NigelDyer

  committed
  c8f7b33

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Commits on Mar 13, 2023

• Improved usage of Hapog output for polishing assemblies

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  NigelDyer

  committed
  dd3201b

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Commits on Mar 5, 2023

• Further changes to make nomenclature 4.3 Python3

  NigelDyer

  committed
  1c21343

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Commits on Jan 17, 2023

• Need an __init__.py file so that modules can be imported by enterobase

  NigelDyer

  committed
  ac5ebf4

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Commits on Jan 12, 2023

• Merge pull request #16 from NigelDyer/Warwick

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  zheminzhou

  authored
  a95ed8a

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Commits on Dec 14, 2022

• Changes to reduce excessive memory usage so that we can run on orac

  NigelDyer

  committed
  4fb05a8

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Commits on Dec 10, 2022

• Further hapog related changes

  NigelDyer

  committed
  e6c9ff4

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• Load prebuilt hapog if installing with old version of gcc

  NigelDyer

  committed
  f5b0cf0

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Commits on Dec 8, 2022

• Dont reinstall Krakendb

  NigelDyer

  committed
  f6f37f8

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Commits on Dec 5, 2022

• Install cmake if needed by hapog

  NigelDyer

  committed
  968d436

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Commits on Dec 4, 2022

• Change usearch default

  NigelDyer

  committed
  587a076

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• Change usearch default

  NigelDyer

  committed
  3ef3743

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• Change to rapidnj compiled with static link by changing to following in the 'not windows' section

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  NigelDyer

  committed
  3c06b7f

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Commits on Nov 30, 2022

• Download minimap2 rather than incoporate it into github repository

  NigelDyer

  committed
  06581e8

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• Minor corrections to teh way output is piped.

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  NigelDyer

  committed
  4ca484b

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Commits on Nov 29, 2022

• Dont use -s to hide make output as this is not supported by older makes, instead catch the stdout

  NigelDyer

  committed
  6e5da0a

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• Dont check certificate for bbduk download

  NigelDyer

  committed
  e58a69d

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Commits on Nov 26, 2022

• Hide some spurious install output

  NigelDyer

  committed
  0f8181b

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Commits on Nov 25, 2022

• Install local htslib for hapog

  NigelDyer

  committed
  02b8d79

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Commits on Nov 24, 2022

• Need to change permission for nextpolish executables

  NigelDyer

  committed
  098b79c

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• Remove unused jar link

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  NigelDyer

  committed
  f46e750

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• Correct typo

  NigelDyer

  committed
  e7c5d63

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• Remove verbose output from nextPolish processing

  NigelDyer

  committed
  81ee81a

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• Correct default minikraken2 location

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  NigelDyer

  committed
  d8c5233

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