pre-commit automated fixes

CONDUCT.md

@@ -1,6 +1,6 @@
 # Contributor Code of Conduct
 
-As contributors and maintainers of this project, we pledge to respect all people who 
+As contributors and maintainers of this project, we pledge to respect all people who
 contribute through reporting issues, posting feature requests, updating documentation,
 submitting pull requests or patches, and other activities.
 
@@ -13,13 +13,13 @@ imagery, derogatory comments or personal attacks, trolling, public or private ha
 insults, or other unprofessional conduct.
 
 Project maintainers have the right and responsibility to remove, edit, or reject comments,
-commits, code, wiki edits, issues, and other contributions that are not aligned to this 
-Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed 
+commits, code, wiki edits, issues, and other contributions that are not aligned to this
+Code of Conduct. Project maintainers who do not follow the Code of Conduct may be removed
 from the project team.
 
-Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by 
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by
 opening an issue or contacting one or more of the project maintainers.
 
-This Code of Conduct is adapted from the Contributor Covenant 
-(http:contributor-covenant.org), version 1.0.0, available at 
+This Code of Conduct is adapted from the Contributor Covenant
+(http:contributor-covenant.org), version 1.0.0, available at
 http://contributor-covenant.org/version/1/0/0/

CONTRIBUTING.md

@@ -1,10 +1,10 @@
 # Contributing to pyobis
 ## Why contribute to the Open Source?
-Contributing to the Open Source is a good way to learn, practice and build experience in every skill you want in life (both soft and hard), if not the best way. 
+Contributing to the Open Source is a good way to learn, practice and build experience in every skill you want in life (both soft and hard), if not the best way.
 + You get the chance to improve the software you rely on, or *the world relies on*.
 + It helps you improve existing skills, in an exponential manner.
 + You not only get to meet people who are really interested in similar things but are also really cool.
-+ You get the chance to find mentors and even teach others. 
++ You get the chance to find mentors and even teach others.
 + You get the feeling of being in a community that's interesting and as good as anything. It feels empowered when you make changes (even smaller ones).
 + You don't always have to code, you can suggest some great ideas or fix a typo in the documentation.
 
@@ -47,7 +47,7 @@ We use GitHub issues to track public bugs. Report a bug by [opening a new issue]
 - A quick summary and/or background
 - Steps to reproduce
   - Be specific!
-  - Give sample code if you can, so that *anyone* with the base python setup can reproduce. 
+  - Give sample code if you can, so that *anyone* with the base python setup can reproduce.
 - What you expected would happen
 - What actually happens
 - Notes (possibly including why you think this might be happening, or stuff you tried that didn't work)
@@ -69,4 +69,4 @@ There are really great resources out there to help you become a successful contr
   + [Zen of Scientific Software Maintenance](https://jrleeman.github.io/ScientificSoftwareMaintenance/)
 
 ## References
-This document was adapted from the open-source contribution guidelines for [Facebook's Draft](https://github.com/facebook/draft-js/blob/a9316a723f9e918afde44dea68b5f9f39b7d9b00/CONTRIBUTING.md) with some changes inspired from [MetPy's guide](https://github.com/Unidata/MetPy/blob/main/CONTRIBUTING.md).
+This document was adapted from the open-source contribution guidelines for [Facebook's Draft](https://github.com/facebook/draft-js/blob/a9316a723f9e918afde44dea68b5f9f39b7d9b00/CONTRIBUTING.md) with some changes inspired from [MetPy's guide](https://github.com/Unidata/MetPy/blob/main/CONTRIBUTING.md).

README.rst

@@ -28,7 +28,7 @@ Main Features
 Here are just a few of things pyOBIS can do:
 
 * Easy handling of OBIS data, easy fetching without handling the raw API response directly.
-* Built-in functions for ``occurrence``, ``taxon``, ``node``, ``checklist`` and ``dataset`` endpoints of OBIS API. 
+* Built-in functions for ``occurrence``, ``taxon``, ``node``, ``checklist`` and ``dataset`` endpoints of OBIS API.
 * Provides easy export of data to ``Pandas`` DataFrame, and helps researchers focus more on analysis rather than data mining.
 
 For examples of how to use this repo, see the jupyter notebooks in the ``/notebooks/`` directory.
@@ -58,8 +58,8 @@ Install editable dev version from github for local development. System prerequis
     cd pyobis
     # install
     python -m pip install -r requirements.txt
-    python -m pip install -r requirements-dev.txt 
-    python -m pip install -e . 
+    python -m pip install -r requirements-dev.txt
+    python -m pip install -e .
     # test your installation
     python -m pytest
     # test and generate a coverage report
@@ -88,9 +88,10 @@ Taxa module
 .. code-block:: python
 
     from pyobis import taxa
-    taxa.search(scientificname = "Mola mola")
-    taxa.search(scientificname = "Mola mola", offset=10)
-    taxa.search(geometry='POLYGON((30.1 10.1, 10 20, 20 40, 40 40, 30.1 10.1))')
+
+    taxa.search(scientificname="Mola mola")
+    taxa.search(scientificname="Mola mola", offset=10)
+    taxa.search(geometry="POLYGON((30.1 10.1, 10 20, 20 40, 40 40, 30.1 10.1))")
     taxa.taxon(10332)
     taxa.taxon(127405)
 
@@ -100,34 +101,40 @@ Occurrence module
 .. code-block:: python
 
     from pyobis import occurrences
-    occurrences.search(scientificname = "Mola mola")
-    occurrences.search(scientificname = "Mola mola", offset=0, size=10)
-    occurrences.search(geometry="POLYGON((30.1 10.1, 10 20, 20 40, 40 40, 30.1 10.1))", size=20)
+
+    occurrences.search(scientificname="Mola mola")
+    occurrences.search(scientificname="Mola mola", offset=0, size=10)
+    occurrences.search(
+        geometry="POLYGON((30.1 10.1, 10 20, 20 40, 40 40, 30.1 10.1))", size=20
+    )
 
 Dataset module
 ##############
 
 .. code-block:: python
 
     from pyobis import dataset
-    dataset.search(scientificname = ["Mola", "Abra", "Lanice", "Pectinaria"])
-    dataset.get(id = "ec9df3b9-3b2b-4d83-881b-27bcbcd57b95")
+
+    dataset.search(scientificname=["Mola", "Abra", "Lanice", "Pectinaria"])
+    dataset.get(id="ec9df3b9-3b2b-4d83-881b-27bcbcd57b95")
 
 Nodes module
 ############
 
 .. code-block:: python
 
     from pyobis import nodes
-    nodes.search(scientificname = ["Mola", "Abra"] )
+
+    nodes.search(scientificname=["Mola", "Abra"])
 
 Checklist module
 ################
 
 .. code-block:: python
 
     from pyobis import checklist as ch
-    ch.list(scientificname = "Cetacea")
+
+    ch.list(scientificname="Cetacea")
 
 Usage Guide
 ===========
@@ -160,4 +167,4 @@ Further Reading
    :target: http://pyobis.readthedocs.org/en/latest/?badge=latest
 
 .. |tests| image:: https://github.com/iobis/pyobis/actions/workflows/tests.yml/badge.svg
-   :target: https://github.com/iobis/pyobis/actions/workflows/tests.yml   
+   :target: https://github.com/iobis/pyobis/actions/workflows/tests.yml

docs/checklist.rst

@@ -7,4 +7,4 @@ checklist module
 
 .. automethod:: checklist.list
 .. automethod:: checklist.redlist
-.. automethod:: checklist.newest
+.. automethod:: checklist.newest