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12 stars written in C++
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a featureful union filesystem

C++ 4,563 185 Updated Mar 5, 2025

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

C++ 792 166 Updated May 29, 2024

Versatile open-source tool for microbiome analysis

C++ 691 125 Updated Feb 28, 2025

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

C++ 430 119 Updated Mar 13, 2024

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

C++ 116 17 Updated Mar 6, 2025
C++ 105 25 Updated Jan 15, 2025

Rapid sensitive and accurate read mapping via quasi-mapping

C++ 89 23 Updated Jun 5, 2020

A repository for generating strobemers and evalaution

C++ 77 12 Updated Apr 16, 2024

Fast and space-efficient taxonomic classification of long reads

C++ 43 2 Updated Feb 27, 2025

Linear-time de novo Long Read Assembler

C++ 38 2 Updated Jan 29, 2025

Kraken2 Server

C++ 21 4 Updated Jan 23, 2024