AlphaFold 3 inference pipeline.

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Quickly search, compare, and analyze genomic and metagenomic data sets.

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hie…

A repository for generating strobemers and evalaution

Fast and space-efficient taxonomic classification of long reads

Latent Embedding Multivariate Regression

Singularity recipe for AlphaFold

Linear-time de novo Long Read Assembler

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

Aggregate results from bioinformatics analyses across many samples into a single report.

A tool for projecting genomic alignments to transcriptomic coordinates

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

Reference genome resource manager

Manager for multi-container computing environments

Bulker registry

Kraken2 Server

Annotation and segmentation of MAS-seq data

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

A DSL for data-driven computational pipelines

markov cluster algorithm - python

A high performance implementation of HDBSCAN clustering.

Versatile open-source tool for microbiome analysis

DNA plotting library for Python

Rapid sensitive and accurate read mapping via quasi-mapping