AlphaFold 3 inference pipeline.

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

Official git repository for Biopython (originally converted from CVS)

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Quickly search, compare, and analyze genomic and metagenomic data sets.

DNA plotting library for Python

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hie…

markov cluster algorithm - python

Reference genome resource manager

Little sequence file utilities meant to work within Unix pipelines

Singularity recipe for AlphaFold

Annotation and segmentation of MAS-seq data

Seqnature: incorporate SNPs and Indels into a reference genome