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Update README.md
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ATPs committed Aug 22, 2022
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* **peptides|q-value|min**: minimum q-value for peptide sequences calculated by Percolator.
* **GENCODE|group**: relative location of peptides to GENCODE gene models. Values could be 'All_intron', 'All_intergene', 'All_UTR', 'All_exon_noncoding', 'All_transcript_coding', 'All_CDS', 'All_exon_coding', 'other', 'All_transcript_noncoding', 'All_transcript'.
* **spectrums**: Spectrums matches with the peptides. The IDs look like "26N1_31599,1G48_65306", where "26N1" is the MS run ID in table S3 of the manuscript and "31599"
* **relaxed**, **stringent**, **strictest**, **relaxed|PepQuery**, **stringent|PepQuery**, **strictest|PepQuery**, **HUPO|relaxed**, **HUPO|stringent**, **HUPO|strictest**, **HUPO|relaxed|PepQuery**, **HUPO|stringent|PepQuery**, **HUPO|strictest|PepQuery**: value could be 0 or 1. Different filtering standards.
* **relaxed**, **stringent**, **strictest**, **relaxed|PepQuery**, **stringent|PepQuery**, **strictest|PepQuery**, **HUPO|relaxed**, **HUPO|stringent**, **HUPO|strictest**, **HUPO|relaxed|PepQuery**, **HUPO|stringent|PepQuery**, **HUPO|strictest|PepQuery**: value could be 0 or 1. Different filtering standards. `HUPO` stands for the "Human Proteome Organization", which designs the HPP (Human Proteome Project) guidelines. `HUPO` means the `HPP` filtering standard.
* Table_S5_proteins.info.tsv.gz
* Novel proteins in table S5 of the manuscript with additional annotations. Columns are:
* **protein_id**: novel protein ID.
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