Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

Oxford Nanopore's Basecaller

"Radiative Gaussian Splatting for Efficient X-ray Novel View Synthesis" (ECCV 2024)

A napari plugin to process and analyse images with chatGPT!

Eukaryotic genome annotation software.

Reference and citation map for literature review and discovery

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Align proteins to genomes with splicing and frameshift

Graphical interactive tool for the visualization of sequence graphs in GFA format.

A list of interesting genome browser and genome visualization programs

Fast and scalable nanopore adaptive sampling

Plotting scripts for long read sequencing data

Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

A place to track nanopore formats

Aligns short reads using dynamic seed size with strobemers

A repository for generating strobemers and evalaution

Toolkit for processing sequences in FASTA/Q formats

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

Streaming assembly for MinION data

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Pore-C support

Raw nanopore signal mapper that enables real-time targeted sequencing

A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files

SRA Tools

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

Gene cluster comparison figure generator