* Update ch1-1_Basics.ipynb
* Revert "Update ch1-1_Basics.ipynb"
This reverts commit 18526846826adca528ff0a4ccf942a46af189608.
* play around with stochastics in exploratory notebook
* differentiate filename and path in moose export
* fix errors in moose notebook
* Delete main.yml
* [CLN] Refactored DataMutation and Model to ImplicitCoKriging and Project
* work on hierarchical modelling test notebook
* [DOC] finish notebook with example for hierarchical modeling
* Fix 335 (#336)
* [DOC] Updated version
* [BUGFIX] Fixes typing error
>>> import gempy
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/namur/coding/gempy/gempy/__init__.py", line 10, in <module>
import gempy.plot.plot_api as _plot
File "/home/namur/coding/gempy/gempy/plot/plot_api.py", line 38, in <module>
from .vista import _Vista as Vista
File "/home/namur/coding/gempy/gempy/plot/vista.py", line 56, in <module>
class Vista:
File "/home/namur/coding/gempy/gempy/plot/vista.py", line 108, in Vista
name='lith',
AttributeError: module 'gempy' has no attribute 'Solution'
Co-authored-by: varga <[email protected]>
* [BUG] Plot2D.extract_section_lines breaks
* [DOC] Updated requirements.txt and README.md for Win installation
* [ENH] Added the option in delete series to delete associated data
- Added a gpu_theano file to check the installation
* renamed file_path to table_source and added if/else for directly passing a dataframe instead of loading from csv
* renamed file_path to table_source
* added read_df function for directly reading from dataframe objects and added the corresponding kwargs to init_data function
* added integration test for loading by directly passing a dataframe
* adapted the case checking to incorporate dataframes as well
* fixed the test to actually cover the new behaviour properly
* [DOC] Added explanation to Data_Manipulation notebook, fixed broken link
* minor
* Fixture model (#340)
* [ENH] Added possible fixture model data and example notebook
* [ENH] Small fixes in naming conventions and scalar field plotting
* [META] Add .vs to gitignore
* [TEST] Added test for the old implementation of passing directly dfs
* [ENH] Added a better parser of columns when data is read
* [ENH] Refactored read_Df to set_geometric_data
* [ENH] Init data use the old way to pass frames
* [Test] Update test to the new code
* [DOC] Added export to gocad code to the implicit benchmark
* [DOC] Claudius low memory profile
- nugget effect small bug
* [TEST] Fixing travis
* [BUG] Fix broken Model().read_data when used old kwargs
* [ENH] Giving up trying to edit current vista code
- Added 'hasData' column to surfaces
* [TEST] Ordering a bit the test
* [ENH] Init of the new vista class
* [TEST] Tidying up test and creating only one interpolator
fixture
* [TEST] Fixed gravity test
- Added gravity fixture
- Now it is possible to pass the centered grid after compilation
- update_additional data moved from api to Model
* [TEST] Fixed magnetics
- Added magnetics fixture
- added fw_magnetics to Solution
* [TEST] Fixed topology
- Added fabian and unconformity fixture
* [TEST] Fixed rest of the tests
* [Test] Added fixture model with folding/faulting/unconformity to conftest.py
* Added notebook with example of diamond square algorithm (and additional smoothing step)
* Some edits for PEP8 conformity
* [ENH] Added plot_surface_points
* [BUG] Small fixes
* Vectorized topography generation using DS algorithm - example notebook, first steps for single hierarchy
* Vectorized interpolation with padded checkerboard pattern to reduce number of possible cases
* Extension to point selection on multiple hierarchies
* Selection on multiple hierarchies, including padding and grid visualization; one problem with hierarchy calculation remaining, should be easy to fix.
* Hierarchical point selection now working - notebook contains example comparable to example on Wikipedia (https://en.wikipedia.org/wiki/Diamond-square_algorithm#/media/File:Diamond_Square.svg)
* Added hillshade example
* Generalized point selection in DS algorithm
* set up diamond-square module and test in gempy/utils
* Methods for grid size determination and set-up of class structure
* Updated module with grid selection plots and added (tutorial) notebook using the gempy.utils.diamond_square module
* Implemented full diamond-square interpolation algorithm
* Added tests for grid generation and point selection
* Full implementation vectorized and working! (Need to check parameter settings, next)
* Added possibility to initialize and interpolate on lower hierarchy levels
* Added type hints to function declarations
* Extended testing and fixed type hints
* [ENH] Added plot orientations, topography and structured grid
- [BUG] set_is_fault updates properly Surfaces
* [DOC] Added some docs and making test running
* Added several random functions to generate topography and extended description in tutorial notebook.
* Small changes in notebooks (stored to avoid problems in branch switch)
* [ENH] Capturing errors in gempy_to_rexfile.py
[CLN] Deleted old set_gravity_interpolator
* change interpolation function of topo along sections - still needs tests
* [CLN] Move API to the root folder of gempy
* add new topo section function for testing and comparing with old one
* [ENH] Added editing function
[CLN] Move gempy functions to modules and regions
* [CLN] Refactor all notebooks
* - minor
* [TEST] Minor refactor
* [ENH] First prototype of sphinx gallery running
* [ENH] Add first example
* [ENH] changed spline interpolation to interp2d cubic
* DataforPullRequest
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* clean up functions for interpolating topography along set sections
* move csv data of hierarchical modeling from notebooks to data
* remove my copy of metropolis notebook
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* Revert "[CLN] Move API to the root folder of gempy"
This reverts commit e9080006
* Refactor notebooks/data to examples/data for tests
* [BUG] Fixed: colors for more than 67 surfaces.
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* [DOC] Files converted in mac to avoid windows problems
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* ChangeGemPyAPI
* ChangeGemPyAPI
* ChangeGemPyAPI
* [DOC] Tidy up
* [DOC] Tutorials to %% format
* [DOC] Add subset of columns to render in the GeometricData
- Added verbosity arg to gp.get_data
* [BUG] Added default value to plot_2D
* [MERGE] Merging sphinx and api branches
* [MERGE] Merging pyvista polishing with api and sphinx
* Generate colordict with own palette.
* add default for argument method in interpolate_zvals_at_xy
* [DOC] Tutorial one running
- plot_2d:
- accepts block and values now
- Different series
- [BUG] If only one axes plots on the whole figure
- vista
- [BUG] plot_data now works
- [ENH] compute_model check for an interpolator
- [Test] New test to try vista functionality api
* Updated and cleaned module and extended tests
* Fixed notebook and extended description; included comparison for different roughness values.
* [CLN] Added restricting wrapper to all data objects
* AddTypeHinting
* [CLN] Slit the data.py module and fixing the imports
* [CLN] Stack class encapsulates Series and faults
* [DOC] Some sphinx config
* [DOC] More shpinx config
* [ENH] Move new plotting api to the main frame
* [ENH] Lot of shpinx docs polishing
* [ENH] Fixed the autodocs deprecation!
* [CLN] Removed nptyping dependency
- Fixed lost of types in Stack/Series
- Lot of docstrings in ImplicitcoKriging
* [DOC] All the ImplicitKriging class docstrings updated
* [DOC] Plot 2D and 3D hyperlinks fixed
* [DOC] Docstring has links to examples
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [BUG] Fixed marching cubes bug
* [BUG] Fixed Colors topography pyvista
* [BUG] Fixing travis: Apparently pad does not have explicit mode anymore
* [TEST] Start porting the notebook test to a test file
* [BUG] Solved #397
[TEST]
- Added a test for JanN code
- Added a test for changing the order of the surfaces
- solved minor problems
* [MERGE] Florian's diamond random topo merged
* [ENH] First commit for topography.py rework
* [ENH] Merged hillshading
- Ported to the new plot2d code
- Added test
* [ENH] Topography fixed!!!
- Finally random and gdal are pointing to the same directions
- Test!!
[ENH] Vertical exaggeration in pyvista
* [ENH] Vertical exaggeration in 2d plot too
- More test for 2d plot
* [DOC] Added probability examples
- Topography is saved now
- Fixed latest arviz compatibility
- Moving some probability functionality to modules
- Minor plotting enhancements
- added test pymc
* [ENH] pyvista: scalar_bar
- mjnor stuff
* [ENH] Fixed masked marching cubes
- pyvista scalar_bar inverted
* [ENH] adapting code to scikit image 17.1
* [CLN] Minor cleaning
* [ENH] Size of figures grow with number of axis
- Better projection distance
[BUG] - Axis label were breaking
[TEST] - More 2D test
* [DOC] Moved half of the tutorials to sphinx gallery
* fixed get section polygons and updated tutorials notebook
* deleted plotting function
* [ENH] Fixed mask returning from interpolator
- Fixed bug loading old models
- Fixed bug masking the faults
[TEST] Adding bunch of tests
* [ENH] Add gdal to travis?
* [ENH] Added a bunch of tutorials
* [DOC] All examples and integration added
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis and added getting started
* [DOC] Fixing travis and added getting started
* [DOC] Fixing travis
* [DOC] Fixing travis
* Development flow update readme (#408)
* Restructured and edited introduction readme up to installation
* Updated readme, included now MacOSX 10.14 installation instructions.
* Updated table of contents
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis - added more general documentation
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Adding installation and projects
* [CLN] Remove all notebooks!
* [CLN] small refactorings
* [TEST] added test to travis
* [ENH] All pyvista interactions running again!
* [DOC] Fixing interactive notebooks
* [DOC] Fixing travis to run test
* [TEST] Fixing last test
* [TEST] Fixing last test
* [WIP] Sprint 2.2 - Merge of several open issues opened by me. (#396)
* Update ch1-1_Basics.ipynb
* Revert "Update ch1-1_Basics.ipynb"
This reverts commit 18526846826adca528ff0a4ccf942a46af189608.
* play around with stochastics in exploratory notebook
* differentiate filename and path in moose export
* fix errors in moose notebook
* Delete main.yml
* [CLN] Refactored DataMutation and Model to ImplicitCoKriging and Project
* work on hierarchical modelling test notebook
* [DOC] finish notebook with example for hierarchical modeling
* [ENH] Giving up trying to edit current vista code
- Added 'hasData' column to surfaces
* [TEST] Ordering a bit the test
* [ENH] Init of the new vista class
* Added notebook with example of diamond square algorithm (and additional smoothing step)
* Some edits for PEP8 conformity
* [ENH] Added plot_surface_points
* Vectorized topography generation using DS algorithm - example notebook, first steps for single hierarchy
* Vectorized interpolation with padded checkerboard pattern to reduce number of possible cases
* Extension to point selection on multiple hierarchies
* Selection on multiple hierarchies, including padding and grid visualization; one problem with hierarchy calculation remaining, should be easy to fix.
* Hierarchical point selection now working - notebook contains example comparable to example on Wikipedia (https://en.wikipedia.org/wiki/Diamond-square_algorithm#/media/File:Diamond_Square.svg)
* Added hillshade example
* Generalized point selection in DS algorithm
* set up diamond-square module and test in gempy/utils
* Methods for grid size determination and set-up of class structure
* Updated module with grid selection plots and added (tutorial) notebook using the gempy.utils.diamond_square module
* Implemented full diamond-square interpolation algorithm
* Added tests for grid generation and point selection
* Full implementation vectorized and working! (Need to check parameter settings, next)
* Added possibility to initialize and interpolate on lower hierarchy levels
* Added type hints to function declarations
* Extended testing and fixed type hints
* [ENH] Added plot orientations, topography and structured grid
- [BUG] set_is_fault updates properly Surfaces
* [DOC] Added some docs and making test running
* Added several random functions to generate topography and extended description in tutorial notebook.
* Small changes in notebooks (stored to avoid problems in branch switch)
* [ENH] Capturing errors in gempy_to_rexfile.py
[CLN] Deleted old set_gravity_interpolator
* change interpolation function of topo along sections - still needs tests
* [CLN] Move API to the root folder of gempy
* add new topo section function for testing and comparing with old one
* [ENH] Added editing function
[CLN] Move gempy functions to modules and regions
* [CLN] Refactor all notebooks
* - minor
* [TEST] Minor refactor
* [ENH] First prototype of sphinx gallery running
* [ENH] Add first example
* [ENH] changed spline interpolation to interp2d cubic
* DataforPullRequest
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* [TRY] Using travis to build docs
* clean up functions for interpolating topography along set sections
* move csv data of hierarchical modeling from notebooks to data
* remove my copy of metropolis notebook
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* Revert "[CLN] Move API to the root folder of gempy"
This reverts commit e9080006
* Refactor notebooks/data to examples/data for tests
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* [DOC] Files converted in mac to avoid windows problems
* [DOC] Converted all notebooks into .py files that can be rendered by sphinx-gallery
* ChangeGemPyAPI
* ChangeGemPyAPI
* ChangeGemPyAPI
* [DOC] Tidy up
* [DOC] Tutorials to %% format
* [DOC] Add subset of columns to render in the GeometricData
- Added verbosity arg to gp.get_data
* [BUG] Added default value to plot_2D
* [MERGE] Merging sphinx and api branches
* [MERGE] Merging pyvista polishing with api and sphinx
* add default for argument method in interpolate_zvals_at_xy
* [DOC] Tutorial one running
- plot_2d:
- accepts block and values now
- Different series
- [BUG] If only one axes plots on the whole figure
- vista
- [BUG] plot_data now works
- [ENH] compute_model check for an interpolator
- [Test] New test to try vista functionality api
* Updated and cleaned module and extended tests
* Fixed notebook and extended description; included comparison for different roughness values.
* [CLN] Added restricting wrapper to all data objects
* AddTypeHinting
* [CLN] Slit the data.py module and fixing the imports
* [CLN] Stack class encapsulates Series and faults
* [DOC] Some sphinx config
* [DOC] More shpinx config
* [ENH] Move new plotting api to the main frame
* [ENH] Lot of shpinx docs polishing
* [ENH] Fixed the autodocs deprecation!
* [CLN] Removed nptyping dependency
- Fixed lost of types in Stack/Series
- Lot of docstrings in ImplicitcoKriging
* [DOC] All the ImplicitKriging class docstrings updated
* [DOC] Plot 2D and 3D hyperlinks fixed
* [DOC] Docstring has links to examples
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [TEST] Travis doc generation
* [BUG] Fixed marching cubes bug
* [BUG] Fixed Colors topography pyvista
* [BUG] Fixing travis: Apparently pad does not have explicit mode anymore
* [TEST] Start porting the notebook test to a test file
* [BUG] Solved #397
[TEST]
- Added a test for JanN code
- Added a test for changing the order of the surfaces
- solved minor problems
* [MERGE] Florian's diamond random topo merged
* [ENH] First commit for topography.py rework
* [ENH] Merged hillshading
- Ported to the new plot2d code
- Added test
* [ENH] Topography fixed!!!
- Finally random and gdal are pointing to the same directions
- Test!!
[ENH] Vertical exaggeration in pyvista
* [ENH] Vertical exaggeration in 2d plot too
- More test for 2d plot
* [DOC] Added probability examples
- Topography is saved now
- Fixed latest arviz compatibility
- Moving some probability functionality to modules
- Minor plotting enhancements
- added test pymc
* [ENH] pyvista: scalar_bar
- mjnor stuff
* [ENH] Fixed masked marching cubes
- pyvista scalar_bar inverted
* [ENH] adapting code to scikit image 17.1
* [CLN] Minor cleaning
* [ENH] Size of figures grow with number of axis
- Better projection distance
[BUG] - Axis label were breaking
[TEST] - More 2D test
* [DOC] Moved half of the tutorials to sphinx gallery
* [ENH] Fixed mask returning from interpolator
- Fixed bug loading old models
- Fixed bug masking the faults
[TEST] Adding bunch of tests
* [ENH] Add gdal to travis?
* [ENH] Added a bunch of tutorials
* [DOC] All examples and integration added
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis and added getting started
* [DOC] Fixing travis and added getting started
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis - added more general documentation
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Fixing travis
* [DOC] Adding installation and projects
* [CLN] Remove all notebooks!
* [CLN] small refactorings
* [TEST] added test to travis
* [ENH] All pyvista interactions running again!
* [DOC] Fixing interactive notebooks
* [DOC] Fixing travis to run test
* [TEST] Fixing last test
* [TEST] Fixing last test
Co-authored-by: Japhiolite <[email protected]>
Co-authored-by: Florian Wellmann <[email protected]>
Co-authored-by: alexander.juestel <[email protected]>
Co-authored-by: Alexander G. Zimmerman <[email protected]>
* [DOC] Adding the notebooks!
* [DOC] Adding the notebooks!
* [DOC] Changes in Dockerfile
* [ENH] Updated Dockerfile for preparation of gempy-server
* [DOC] Some thoughts about Interpolator Epic
* [ENH] Improved the function that generate the default gempy colors. However the whole class
needs a better explanation of the api
* [FIX] Added back the main 10 colors
* Moved Petrel integration to subsurface module (#357)
* [TEST] Refactor some test
* [DOC] More thoughts on next Epic
* [BUG] Fix elisas example
* [DOC] Latest changes before release
Co-authored-by: Japhiolite <[email protected]>
Co-authored-by: Alexander Schaaf <[email protected]>
Co-authored-by: Tobi Glaubach <[email protected]>
Co-authored-by: Jan von Harten <[email protected]>
Co-authored-by: javoha <[email protected]>
Co-authored-by: Florian Wellmann <[email protected]>
Co-authored-by: alexander.juestel <[email protected]>
Co-authored-by: Alexander G. Zimmerman <[email protected]>
Co-authored-by: Adam Kosík <[email protected]>
Co-authored-by: elimh <[email protected]>
