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  • Laufer Center for Physical and Quantitative Biology
  • Stony Brook, NY

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Showing results

An Android library to get video's information from Youtube channels.

Kotlin 91 30 Updated Nov 14, 2021

A Kotlin Multiplatform library to parse a RSS Feed

Kotlin 548 128 Updated Feb 27, 2025

FeedFlow is a minimalistic RSS Reader available on Android, iOS, macOS, Windows and Linux. Built with Kotlin Multiplatform, Jetpack Compose and SwiftUI.

Kotlin 455 23 Updated Feb 28, 2025

A collection of codes for running enhanced sampling simulations. No installation needed. Interoperable with any dynamics package. Simple code that is readable and free.

Brainfuck 2 Updated Feb 19, 2025

MELD-AE (Anthony's Edition): A minimal MELD package that uses Amber's REMD code.

Shell 1 Updated Feb 11, 2025
Jupyter Notebook 2 Updated Jan 29, 2025

This repo is a collection of minimal MELD tutorials for new and advanced users. I have implicit/explicit versions and also show how to run conventional MD, T-REMD and T,H-REMD all using MELD.

Python 1 Updated Jan 21, 2025
C++ 13 3 Updated Dec 16, 2024

A framework for minimal adaptive binless methods for weighted ensemble simualtions.

3 Updated Dec 6, 2024

The documents and forum of FeedMe

1,324 28 Updated Feb 22, 2025

Implementation of pattern matching in Python(using gestalt approach)

Python 5 Updated May 17, 2019

PyMed is a Python library that provides access to PubMed.

Python 204 113 Updated Dec 7, 2021

RSS reader for macOS and iOS.

Swift 8,658 548 Updated Feb 15, 2025
Python 2 1 Updated Nov 27, 2024

Protein Graph Library

Jupyter Notebook 1,063 132 Updated Feb 21, 2025

PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.

Python 280 63 Updated Feb 19, 2024

A delightfully minimal, yet remarkably powerful AI Shell Assistant.

Go 338 29 Updated Jan 12, 2025

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

Python 518 116 Updated Jan 13, 2025

The official Meta Llama 3 GitHub site

Python 28,416 3,292 Updated Jan 26, 2025

The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io

Python 330 95 Updated Feb 27, 2025

An open library for the analysis of molecular dynamics trajectories

Python 623 284 Updated Feb 25, 2025

NewsBlur is a personal news reader that brings people together to talk about the world. A new sound of an old instrument.

Objective-C 7,004 1,010 Updated Feb 28, 2025

An Android RSS reader presented in Material You style.

Kotlin 5,541 222 Updated Feb 27, 2025

Tool suite for analysing molecular dynamics trajectories using network analysis and PRS

Python 41 19 Updated May 16, 2024

An application for configuring and running simulations with OpenMM

HTML 62 13 Updated Nov 11, 2024

A user-friendly, Python tool for clustering pathways from molecular dynamics simulations.

Python 8 Updated Feb 24, 2025

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…

C 326 64 Updated Sep 9, 2024

Machine learning for molecular dynamics

Python 13 7 Updated Jan 9, 2025
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