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Laufer Center for Physical and Quantitative Biology
- Stony Brook, NY
Stars
An Android library to get video's information from Youtube channels.
A Kotlin Multiplatform library to parse a RSS Feed
FeedFlow is a minimalistic RSS Reader available on Android, iOS, macOS, Windows and Linux. Built with Kotlin Multiplatform, Jetpack Compose and SwiftUI.
A collection of codes for running enhanced sampling simulations. No installation needed. Interoperable with any dynamics package. Simple code that is readable and free.
MELD-AE (Anthony's Edition): A minimal MELD package that uses Amber's REMD code.
This repo is a collection of minimal MELD tutorials for new and advanced users. I have implicit/explicit versions and also show how to run conventional MD, T-REMD and T,H-REMD all using MELD.
A framework for minimal adaptive binless methods for weighted ensemble simualtions.
Implementation of pattern matching in Python(using gestalt approach)
PyMed is a Python library that provides access to PubMed.
PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.
A delightfully minimal, yet remarkably powerful AI Shell Assistant.
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io
An open library for the analysis of molecular dynamics trajectories
NewsBlur is a personal news reader that brings people together to talk about the world. A new sound of an old instrument.
An Android RSS reader presented in Material You style.
Tool suite for analysing molecular dynamics trajectories using network analysis and PRS
An application for configuring and running simulations with OpenMM
chonglab-pitt / LPATH
Forked from jeremyleung521/LPATHA user-friendly, Python tool for clustering pathways from molecular dynamics simulations.
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…