Python scripts and files used in the analysis of P. longispinus endosymbionts. The relevant publication: Garber, A.I. et al. (2021) The evolution of interdependence in a four-way mealybug symbiosis.
Due to limits in how much data can be uploaded here, there are only a few files used in the analyses present in this repository: raw assembly of endosymbiont genomes, output from SprayNPray, and an assembly graph.
Most of the files indicated within the Python scripts can be found by following the the following figshare links:
- Garber, Arkadiy (2021): Sodalis_and_Symbiopectobacterium_analysis_files. figshare. Dataset. https://doi.org/10.6084/m9.figshare.13661189.v1
- Garber, Arkadiy (2021): Pseudofinder-Symbiopectobacterium_endolongispinus. figshare. Dataset. https://doi.org/10.6084/m9.figshare.13632419.v1
- Garber, Arkadiy (2021): Pseudofinder-Sodalis_endolongispinus. figshare. Dataset. https://doi.org/10.6084/m9.figshare.13632416.v1
- Garber, Arkadiy (2021): Prokka-Symbiopectobacterium_endolongispinus. figshare. Dataset. https://doi.org/10.6084/m9.figshare.13632407.v1
- Garber, Arkadiy (2021): Prokka-Sodalis_endolongispinus. figshare. Dataset. https://doi.org/10.6084/m9.figshare.13632398.v2